Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2097 ATGTCAACTCCTGAAACCTCTGGAAAGAAATACAGGGGAAGACAAAAGATCGAGATGAAAAAAATTGACAATATGAGCAACCTTCAAGTTACCTTCTCGAAGCGCCGTAACGGGCTCTTCAAGAAAGCTAACGAGTTATGCACCCTTTGTGGTGTAGAGCTCGCTCTCATAGTCTTTTCACCTGGTGAGAAAGCCTTCTCTTTCGGGCACCCTAGCGTGGATGTCATCACCCAACGCTACCTCTCTCAAGCCCCACATCAAACTTCCATCACCATGAGGTACATTGAGGCTCAGCGAAGCGCCAATGTGCGTGACCTCAATGTGCATCTCACCCGAATCAACAACCAGCTGGACGCCGATAGGAAGAACAGTGAGGAGCTTAACCGCATGCGCAAGGAGGCTCAAGCCCAATTCTGGTGGGCTTGTAAGGCGGAGGAGATGAATAGGCCTCAACTTGAGATATTCAGGGAGGCACTAGTCGAGCTTAAGAAGCAAGTCCTTCTCTGCGGTGTTACTACTGCTGCTACCAACCCACCAATTCATCAATTTGTTGATGGTTTTGGTGGTATCAACAATGACATGATCCATTTCAACAACCCACCGCCTCCACCCCCTCAAGCGTTCCCACAACAAATTTTTCAAGGCCCCATGACGCAGGCTCATCACTCGTTTGGATTTGATAACATGGGAGGGTATGGAGGACCCCTGAATTTTTCTGAGATCTTTCCTTGA 732 0.485 MSTPETSGKKYRGRQKIEMKKIDNMSNLQVTFSKRRNGLFKKANELCTLCGVELALIVFSPGEKAFSFGHPSVDVITQRYLSQAPHQTSITMRYIEAQRSANVRDLNVHLTRINNQLDADRKNSEELNRMRKEAQAQFWWACKAEEMNRPQLEIFREALVELKKQVLLCGVTTAATNPPIHQFVDGFGGINNDMIHFNNPPPPPPQAFPQQIFQGPMTQAHHSFGFDNMGGYGGPLNFSEIFP* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2097 243 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Lja5g2097 243 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Lja5g2097 243 SUPERFAMILY SRF-like 13 92 IPR036879 GO:0003677|GO:0046983
Lja5g2097 243 CDD MADS_MEF2_like 13 81 IPR033896 GO:0000977|GO:0045944
Lja5g2097 243 PANTHER MADS BOX PROTEIN 11 169 - -
Lja5g2097 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 11 169 - -
Lja5g2097 243 Coils Coil 110 137 - -
Lja5g2097 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Lja5g2097 243 Gene3D - 92 167 - -
Lja5g2097 243 Gene3D - 24 91 IPR036879 GO:0003677|GO:0046983
Lja5g2097 243 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Lja5g2097 243 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Lja5g2097 243 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2097 Lja-Chr5 28504521 28505252 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2097 9 179 Type I MADS-box Gene Family AT5G60440 49.714 5.57e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja5g2097 SRF-TF 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2097 - - lja:Lj5g3v2059610.1 270.396