Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2076 ATGATGAAATTGGGATTTGAAGTCCTTCATGCAAATCCAAACATCATGATTCGTCCCCACATGCATGAAACTTGGGACTACCCAAACATTGCTGATCATCACTTGCCACCACCTCCAACCCCATCAAACCCACCATATCCAAAACCATCATCAACTGAAAACCACTGCATAAACTTTACACAGAATAATGAGGTGTGTGATTGGGTGGAGCATATTACCAAACACCTTGTTGAGGACATACCAGACACCACTTCTGATAGCAACTTACTACCCAACAACCTTTTCCCTTCACAGCTTTCACACAATTTCAATCCAAGAAAATCCACATGTGTTTATGACCCCACAAGCAGCAGCAACAATTTCAATCTCATTCAAACAAACACAATCATCCCAGTTTTAGATCATAATAACCATAGCAATATTGCTCATGATCATGAGTTAACCCTGATAACCCTTCTAATGGAGTGTGCAGTTGCAATCTCTGTTGAAAACCTCATTGAGGCTCATAAAATGTTGCTGGAACTAACACAAGTGGCTTCACCTTACAAACCATCATGTGCTGAGCGTGTTGTTGCCTATTTTGCAAAGGCCATGGCTAGTAGAGTGATGAACTCCATGCTTGGGGTGTGTTCCCCTTTGATTGATCACAGGACCATTCACTCTGCACTCCAAGTGTTCAACAATATGTCTCCTTTCATAAAGTTTGCTCATTTCACCTCCAACCAGGCCATCCTCGAAGCGGTGAATCGCTGCGGCAGCATTCACATCATTGACTTGGACATCATGCAGGGGCTGCAGTGGCCACCCTTCTTCCACATCCTCGCCACCCGAATCGAGGGTCCCCCGGAGGTTCGGATGACCGGCATGGGGAGCTCAATGGAGCTCCTTGTTGAGACAGGGAAAAACCTCACCAACTTTGCAAGAAGGCTTGGCATATCCTTAAAGTTCAACCCTGTTGTGACAAAGTTTGGGGAAGTTGATGTTTCAATTTTGAAAGCAAGGCCTGGTGAGACACTTGCAGTGCACTGGTTGCAGCACTCTTTGTATGATGCAACTGGTCCTGATTGGAAAACACTGAGGCTTCTTGAGGAGTTGGAGCCAAGAATCATCACTTTGGTGGAGCAAGATGTTAACCATGGAGGGGCTTTCTTGGACCGTTTTGTTGGCTCCTTGCACTACTATTCCACCCTCTTTGATTCCCTTGGAGCATGTTTGCATAGTGATGATGATAGAAGGCACAGTGTGGAGCATGGTCTTCTGTCTAGGGAGATCAACAATATATTGGCCATTGGAGGCCCTGCGAGGAGTGGTGAAGACAAGTTTAGGCAGTGGAGGAGTGAGCTAGCTAGGAATTGCTGCTTTGTGCAGGTTCCAATGAGTGTGAATTCAATGGCTCAAGCTCAGTTGATATTGAACATGTTTTCACCTGCTCTTGGGTATAGCCTTGCACAAGTTGATGGCACATTAAGGCTTGGATGGAAGGATACTAGCTTGTACACAGCTTCTGCATGGACCTGTGGTGGCGGTGCTTCTAGGTAG 1539 0.4581 MMKLGFEVLHANPNIMIRPHMHETWDYPNIADHHLPPPPTPSNPPYPKPSSTENHCINFTQNNEVCDWVEHITKHLVEDIPDTTSDSNLLPNNLFPSQLSHNFNPRKSTCVYDPTSSSNNFNLIQTNTIIPVLDHNNHSNIAHDHELTLITLLMECAVAISVENLIEAHKMLLELTQVASPYKPSCAERVVAYFAKAMASRVMNSMLGVCSPLIDHRTIHSALQVFNNMSPFIKFAHFTSNQAILEAVNRCGSIHIIDLDIMQGLQWPPFFHILATRIEGPPEVRMTGMGSSMELLVETGKNLTNFARRLGISLKFNPVVTKFGEVDVSILKARPGETLAVHWLQHSLYDATGPDWKTLRLLEELEPRIITLVEQDVNHGGAFLDRFVGSLHYYSTLFDSLGACLHSDDDRRHSVEHGLLSREINNILAIGGPARSGEDKFRQWRSELARNCCFVQVPMSVNSMAQAQLILNMFSPALGYSLAQVDGTLRLGWKDTSLYTASAWTCGGGASR* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2076 512 PANTHER OS05G0485400 PROTEIN 16 506 - -
Lja5g2076 512 MobiDBLite consensus disorder prediction 32 48 - -
Lja5g2076 512 MobiDBLite consensus disorder prediction 31 52 - -
Lja5g2076 512 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 16 506 IPR005202 -
Lja5g2076 512 Pfam GRAS domain family 149 505 IPR005202 -
Lja5g2076 512 ProSiteProfiles GRAS family profile. 140 505 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2076 Lja-Chr5 27594307 27596175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2076 155 505 GRAS Transcription Factor Family AT3G54220 53.911 4.73e-133 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja5g2076 GRAS 1.7e-103 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2076 - - gmx:100775656 733.021