Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2075 ATGGATTCTGCAAGGAGCTGGCTTCAGAAGTTCCAGCCTCGAGATAAAATGAAGTCAAAGAAGAAGGATGAGGATGGTGGTGGTGGGGATCGAGATTTGAGTGCACCCGTGGATGAAGCGTCTCTTTCGAGTGACACGAAGCAGAAGGTTGCAGCGGCAAAGCAGTATATTGAAAATCATTACAAGGAGCAGATGAAGAACCTTCAGGAGAGGAAGGAGCGGCGAACCTTCTTGGAAAAGAAGTTGGCTGATGCTGATGTCTCTGAAGAGGATCAAAACAACCTGCTTAAGTTTTTAGAGAAAAAGGAAACTGAATATATGCGCCTTCAGAGGCACAAGATGGGGGTTGAGGATTTTGAGTTATTGACTATGATTGGAAGAGGTGCATTTGGGGAGGTCAGAGTCTGTAGGGAGAAGACGACTGGTAATGTATATGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGCCGAGGCCAGGTTGAACATGTCAAAGCGGAAAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTCAAACTTTATTGTTCTTTCCAGGATGATGAGTATCTGTATCTTATCATGGAGTATCTACCGGGTGGAGATATGATGACTCTACTTATGAGAAAGGATACCTTGACTGAAGATGAAGCCAGATTTTATGTAGCAGAAACAATTCTGGCTATTGAATCTATACACATACACAATTATATACATAGGGATATCAAGCCTGACAACTTATTACTTGATAAATACGGGCACTTGAAACTGTCAGATTTTGGACTTTGTAAACCATTAGATTGTAGTACACTTGAAGAAAAGGATTTTTCCGGGGGTCCGAATGTGAATGGATCTACACAGAATAATGAGAGTTCAGCTCCAAAACGTACACAACAGGAACAACTGCAAAACTGGCAAAAAAACAGGAGGACACTTGCTTATTCCACAGTGGGTACACCAGATTATATTGCTCCAGAAGTTCTTTTGAAGAAAGGTTATGGAATGGAGTGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGAGCCAATGGCAACATGTAGAAAGATAGTGAACTGGAGATCTTACTTGAAATTTCCTGAAGAAGCTATGCTATCCCCAAAAGCTAAAGGGCTTATTAGTAGACTTTTGTGTAATGTCAACCAGAGGCTGGGGTCAAAAGGTGCTGATGAAATAAAGGCTCATGCCTTCTTCGAAGGTGTTGAATGGGATAAGCTGTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTCGAAAAGTTTGATGAGACTGACAACCAAAGTCAATCATCAAGAAGAGCTGGTCCATGGAGGAAGATGCTTTCGTCCAAGGACTTGAATTTTGTTGGATACACGTACAAGAACTTCGAAATTGTCAATGATTACCAAGTTCCTGGGATGGCTGAACTGAAGAAGAAACCGTCCAAATCAAAGAGACCATCCATCAAGTCACTTTTTGATTCTGAGTCGGAGATATCAGAGGGATCTGAGATTTCTGATACATCTGCTAGTAACAGACCTACTCAAGGAAGCTTTTTAAATCTCTTGCCACCCAAAGCAGAGCCATCTCATAGCGCGAGGAATCTTCCTCCAAAATACTAA 1683 0.4141 MDSARSWLQKFQPRDKMKSKKKDEDGGGGDRDLSAPVDEASLSSDTKQKVAAAKQYIENHYKEQMKNLQERKERRTFLEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVEDFELLTMIGRGAFGEVRVCREKTTGNVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVAETILAIESIHIHNYIHRDIKPDNLLLDKYGHLKLSDFGLCKPLDCSTLEEKDFSGGPNVNGSTQNNESSAPKRTQQEQLQNWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMATCRKIVNWRSYLKFPEEAMLSPKAKGLISRLLCNVNQRLGSKGADEIKAHAFFEGVEWDKLYQMEAAFIPEVNDELDTQNFEKFDETDNQSQSSRRAGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMAELKKKPSKSKRPSIKSLFDSESEISEGSEISDTSASNRPTQGSFLNLLPPKAEPSHSARNLPPKY* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2075 560 MobiDBLite consensus disorder prediction 513 539 - -
Lja5g2075 560 Gene3D Phosphorylase Kinase; domain 1 90 202 - -
Lja5g2075 560 SMART pkinase_C_6 418 482 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja5g2075 560 SMART serkin_6 119 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2075 560 ProSiteProfiles Protein kinase domain profile. 119 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2075 560 MobiDBLite consensus disorder prediction 9 32 - -
Lja5g2075 560 MobiDBLite consensus disorder prediction 276 305 - -
Lja5g2075 560 PANTHER SERINE/THREONINE-PROTEIN KINASE 42 531 - -
Lja5g2075 560 Gene3D Transferase(Phosphotransferase) domain 1 203 270 - -
Lja5g2075 560 Coils Coil 61 81 - -
Lja5g2075 560 MobiDBLite consensus disorder prediction 1 48 - -
Lja5g2075 560 MobiDBLite consensus disorder prediction 498 512 - -
Lja5g2075 560 CDD STKc_NDR_like 117 481 - -
Lja5g2075 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Lja5g2075 560 SUPERFAMILY Protein kinase-like (PK-like) 92 468 IPR011009 -
Lja5g2075 560 MobiDBLite consensus disorder prediction 280 305 - -
Lja5g2075 560 ProSiteProfiles AGC-kinase C-terminal domain profile. 418 490 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja5g2075 560 Pfam Protein kinase C terminal domain 436 480 IPR017892 GO:0004674|GO:0005524|GO:0006468
Lja5g2075 560 Gene3D Transferase(Phosphotransferase) domain 1 312 435 - -
Lja5g2075 560 MobiDBLite consensus disorder prediction 497 560 - -
Lja5g2075 560 Pfam Protein kinase domain 120 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2075 560 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Lja5g2075 560 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 42 531 - -
Lja5g2075 560 Gene3D Phosphorylase Kinase; domain 1 436 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2075 Lja-Chr5 27574887 27587398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2075 1 516 AGC Kinase Gene Family AT2G20470 78.161 0.0 846
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Lja5g2075 Pkinase 8e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2075 K08790 - gmx:100820558 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2075 5 27574887 27587398 Lja5g2075 5 27574887 27587398 ECH
Lja5g2075 5 27574887 27587398 Lja1g1018 1 10107303 10116266 PCT