Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2072 ATGGAGGAAGAGCAGGATCGAATTTTGCTCTCCAGTTTGGGCGTGAAGTCTGCCAATCCCGAAGACATCGAACGCCATGTTTTGGAAAAGGCTAGGAATGATGCTGCAGTGACTGTTACTACTGAAGGTGAAGGGAGCAACACCAAGGAAGAAGAGTCTTCTCATTCACGGGAACCTCTTGATCCATCTTCGACTGCTAAAGCGGAGCTTCATCAGAAGCTGCGGGCGGTGGAGTTTGAAATAGGCGCGGTTTCTTCCACTATTCGGAAGCCGAAAAAAGATGGTGGTGGTGAGGGTAGCTCGGAGCGAGGGGTTGCTGAGGGTGATGCCCCTGGTGGTGGTGGTGGTGATGGTTCGAGTCTTCAGCGTGCTCTTGCTGCAGATAGGCTCAGGAGCTTGAAGAATACTAGGGCTAAATTGACGAATGAGCTTTCCAGTTTGTGTGAAAAGAACACGAAGGCTCAGCTAGAGGAAGAGCTTGCCAATTTGCGGAAGACTCTGCTTCGGAGTTTAGTTAAGGAAGACACGAGGCCGAAGAAGAAGCTTAAAGAAGATAAAAAGTTGACTAAAAAATCGGGGAAACGAGTTAAGACGGTCTCGTTTAATGATGATGCTGATTTCGACGCTGTTTTGGATGCAGCTTCTGCTGGCTTTGTTGAAACCGAAAGGGATGAAATGGTCAGAAAAGGAATTTTAACTCCTTTTCATAAGCTGAAGGGATTTGAGCGGCGCTTTAGTCAACCTGAAGCATCAGCTAGTCATAATGCTGAAACATCCGCTAGCCATGCTGCAGCACAGCAAGAAAACAATGGTGATCTTGTCTCTTCCAGTGTTGAAAGAGCTGCTAGATCATTTTCTGAGGCAGCGAAAGCTCGCCCCACCACCAAGCTGCTTGAGTCTAGAGATTTACCGAAGCTTGATGCACCCACTATTCCCTTTCGCAGGCTCACAAAACCTCTTAAATATTCCAAACCTATAGATAGAGAGGCCGAGCCAAATAAAGATTCAAAAAGGAAAAGGAAGCGACCTTTGCCTGGTAGGCAATGGACCAATCGTGTTTCTCGTGAGGATATGCAGCTGGAAGATAGTGAAAATGCAAATGGTTGTTTGGATACTTCCGATCAGGAAAATTTAGGAGCACAAGATGACCTTGCTGATCATGAATCTTCTTATGTCACATTAGAAGGTGGGCTGAAAATCCCTGATAACATATTTGAAGCTCTGTTTGATTATCAAAAGGTTGGTGTTCAATGGCTGTGGGAATTACATTGTCAAAAAGCTGGTGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACTGTCCAGGTGTTATCATTTCTGGGTGCATTGCATTTCAGTGGTATGTTCAAGCCCAGCATTATTGTCTGTCCTGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTAATAAGTGGTACCCGAAATTCCATGTAGAGCTTTTACATGATTCTGCTCAGGATTCTGCCCCTAAAAAGAAGCAAGACAAATCCGATGAATCAGACTATGAAAACAGTAGTTCAGATGACAATGATAATGAGAGAAGTATGTCATCTGGAAACTCAAGAAAATGGGAATCCCTGATAAATCGTGTCACAAGATCTGAATCGGGATTACTTATCACCACTTATGAGCAGCTCAGAATATTGGGGGACCAATTGCTTGACATTGAATGGGGCTACGCAGTTCTTGATGAAGGGCATAAAATAAGGAATCCGAATGCTGAAGTCACCCTCGTATGCAAACAGCTTCAAACTGTACACCGCATCATAATGACTGGTGCACCTATTCAGAACAAACTGACTGAACTCTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTACCTGTATTTGAAGCTGAATTTGCAGTTCCAATAGGAGTTGGTGGATATGCAAATGCCACACCCTTACAAGTATCAACAGCATACAGGTGTGCCGTGGTGCTTCGTGATTTAATCATGCCATATCTTCTCCGACGCATGAAGGCTGATGTAAATGCTCAACTTCCTAATAAAACTGAGCATGTTTTATTTTGCAGTCTTACACCAGAGCAAGTATCTTCTTACAGGGCATTTTTAGCAAGCACTGAAGTGGAGGAAATATTGGATGGAAACCGGAATTCTCTGTCTGGGATTGATGTAATGCGCAAGATCTGCAACCATCCTGACCTACTTGAAAGGGACCATGCCTTAAGTAATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAGGTGCTTAATGTTTGGAAGGAACAAGGTCACCGTGTTCTTCTTTTCTGTCAAACCCAACAAATGCTTGACATTTTTGAGAATTTTTTGACTACTTCTGGTCATGTTTACCGGAGAATGGATGGTCACACTCCCGTCAAATATAGAATGGCTTTAATAGATGAATTTAATGCCTCAAACGAGATATTTGTTTTCATTTTGACAACCAAAGTTGGGGGTTTAGGGACAAATCTTACAGGTGCAAATAGGGTGATCATCTTCGACCCTGATTGGAATCCTTCAACTGATATGCAAGCTAGAGAGCGTGCTTGGCGCATTGGTCAGAAACGGGATGTGACAGTGTATAGGTTGATCACACGTGGAACGATAGAGGAGAAAGTGTATCACCGGCAGATTTACAAACATTTTCTTACCAATAAGATATTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGACCTTTTCATACTGAATGTGGATGGAGATACTGGGTCTACTGAAACATCGAACATTTTCAGTCAAATATCTGAAGAAGTAAATGTCATTGGTTCACACATAGATAATCAGGATAAGCATCAATATAACCAAACTGCTGAAGCGGGTTCTGGAGATGATGACGTTGATAATGATGGTGAATCACCGAGAGGATCTTTAAGAGGAAAAGGGAAAGAGAAGGTTGAAGGCGGCAGTGGAATTGATGAGGAAACAAATATATTGAAAAGTCTTTTTGACGCCAATGGCATACATAGTGCCATGAACCATGATGTGATCATGAATGCTCATGATGGGGAGAAGATGAGACTTGATGAGCAAGCTTCCCAGGTTGCGCAACGAGCTGCAGAAGCTTTACGTCAGTCACGGATACTCCGAAGCAATGACAGCGTCTCCGTTCCAACATGGACAGGAAGGTCGGGAGCTGCTGGTGCACCATCATCAGTTCGGCGGAAGTTTGGTTCAACCGTGAATCCCCAGTTAGTAAATAATTCAAAGGCACCGGATGCATTACCAAGCAACGGTACCAACAAATTCAATGGATTTGCTGCTGGGGCATCTTCTGGTAAAGCATTATCTTCTGCTGAACTGTTGTCTAAAATTCGAGGTAACCAAGAAAAAGCAATCGGTGCTGGGCTTGAACATCAGCTTGGTACGTCCAGTACCACTAATCAAGCAAGATCTACAGATGTTAGATCTTCTAGGGCTGCTGAAAATTCATCTGGATCGCAACCTGAAGTATTGATTCGTCAAATATGTACTTTTCTACAACAGCAAGGTGGTAGTTCCAGTTCAGCCAGCATAGTACAGCATTTCAAGGACCGTGTTTCCTCAAGAGAACTTGCCCTATTCAAGAATATGTTAAAGGAAATAGCAATTTTGCAGAAAGGATCAAATGGTTCCCATTGGGTTCTGAAGCCAGAGTATCAATAA 3714 0.4324 MEEEQDRILLSSLGVKSANPEDIERHVLEKARNDAAVTVTTEGEGSNTKEEESSHSREPLDPSSTAKAELHQKLRAVEFEIGAVSSTIRKPKKDGGGEGSSERGVAEGDAPGGGGGDGSSLQRALAADRLRSLKNTRAKLTNELSSLCEKNTKAQLEEELANLRKTLLRSLVKEDTRPKKKLKEDKKLTKKSGKRVKTVSFNDDADFDAVLDAASAGFVETERDEMVRKGILTPFHKLKGFERRFSQPEASASHNAETSASHAAAQQENNGDLVSSSVERAARSFSEAAKARPTTKLLESRDLPKLDAPTIPFRRLTKPLKYSKPIDREAEPNKDSKRKRKRPLPGRQWTNRVSREDMQLEDSENANGCLDTSDQENLGAQDDLADHESSYVTLEGGLKIPDNIFEALFDYQKVGVQWLWELHCQKAGGIIGDEMGLGKTVQVLSFLGALHFSGMFKPSIIVCPVTLLRQWKREANKWYPKFHVELLHDSAQDSAPKKKQDKSDESDYENSSSDDNDNERSMSSGNSRKWESLINRVTRSESGLLITTYEQLRILGDQLLDIEWGYAVLDEGHKIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPIGVGGYANATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPNKTEHVLFCSLTPEQVSSYRAFLASTEVEEILDGNRNSLSGIDVMRKICNHPDLLERDHALSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFCQTQQMLDIFENFLTTSGHVYRRMDGHTPVKYRMALIDEFNASNEIFVFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFILNVDGDTGSTETSNIFSQISEEVNVIGSHIDNQDKHQYNQTAEAGSGDDDVDNDGESPRGSLRGKGKEKVEGGSGIDEETNILKSLFDANGIHSAMNHDVIMNAHDGEKMRLDEQASQVAQRAAEALRQSRILRSNDSVSVPTWTGRSGAAGAPSSVRRKFGSTVNPQLVNNSKAPDALPSNGTNKFNGFAAGASSGKALSSAELLSKIRGNQEKAIGAGLEHQLGTSSTTNQARSTDVRSSRAAENSSGSQPEVLIRQICTFLQQQGGSSSSASIVQHFKDRVSSRELALFKNMLKEIAILQKGSNGSHWVLKPEYQ* 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2072 1237 MobiDBLite consensus disorder prediction 1 72 - -
Lja5g2072 1237 CDD SF2_C_SNF 751 876 - -
Lja5g2072 1237 MobiDBLite consensus disorder prediction 1142 1170 - -
Lja5g2072 1237 MobiDBLite consensus disorder prediction 45 64 - -
Lja5g2072 1237 MobiDBLite consensus disorder prediction 320 338 - -
Lja5g2072 1237 Gene3D - 675 965 IPR027417 -
Lja5g2072 1237 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 756 915 IPR001650 -
Lja5g2072 1237 SMART ultradead3 404 636 IPR014001 -
Lja5g2072 1237 MobiDBLite consensus disorder prediction 959 995 - -
Lja5g2072 1237 MobiDBLite consensus disorder prediction 317 376 - -
Lja5g2072 1237 MobiDBLite consensus disorder prediction 1139 1170 - -
Lja5g2072 1237 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 420 619 IPR014001 -
Lja5g2072 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 392 669 IPR027417 -
Lja5g2072 1237 CDD DEXHc_ERCC6 408 618 - -
Lja5g2072 1237 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 267 1136 - -
Lja5g2072 1237 MobiDBLite consensus disorder prediction 85 126 - -
Lja5g2072 1237 MobiDBLite consensus disorder prediction 492 524 - -
Lja5g2072 1237 Pfam Helicase conserved C-terminal domain 758 865 IPR001650 -
Lja5g2072 1237 Coils Coil 123 173 - -
Lja5g2072 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 671 926 IPR027417 -
Lja5g2072 1237 MobiDBLite consensus disorder prediction 246 279 - -
Lja5g2072 1237 MobiDBLite consensus disorder prediction 284 303 - -
Lja5g2072 1237 MobiDBLite consensus disorder prediction 492 525 - -
Lja5g2072 1237 PANTHER SNF2/RAD54 FAMILY MEMBER 267 1136 - -
Lja5g2072 1237 Pfam SNF2-related domain 411 733 IPR000330 GO:0005524|GO:0140658
Lja5g2072 1237 Gene3D - 380 668 IPR038718 -
Lja5g2072 1237 MobiDBLite consensus disorder prediction 971 994 - -
Lja5g2072 1237 MobiDBLite consensus disorder prediction 248 279 - -
Lja5g2072 1237 SMART helicmild6 782 865 IPR001650 -
Lja5g2072 1237 Coils Coil 1028 1048 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2072 Lja-Chr5 27535779 27542469 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2072 757 919 RAD5 or RAD16-like Gene Family AT1G11100 34.940 4.78e-22 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja5g2072 SNF2_N 2.9e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2072 K10841 - gmx:100820025 1837