Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2063 ATGGATTCGGATCAGGGCAAGCTTTTCATCGGTGGGATTTCATGGGACACGAATGAGGACAAGCTCAAAGAGCATTTCAGCAACTATGGTGATGTTTTGAACACTTCTGTCATGAGGGAGAAGAACACTGGAAAACCTAGAGGATTTGGGTTCGTCGTGTTTTCAGATCCTGCTGTTCTCGATGCTGTTCTTGAAGACAAGCACGTTATCGATGGGAGAACGGTTGATGCCAAGAGGGCATTCTCAAGAGAGGATCAACAGATTTCTGTCACTTCCAGAGCTGGAAATCCTAATTCTGGTATGAATTCTGGAAATGGTGGTAATGTTAGGACCAAAAAGATATTTGTTGGAGGGTTGCCCCCGACCCTGACTGAAGAAAAATTCCGTCAGTACTTTGAGTCTTATGGACATGTAACTGATGTAGTAGTGATGTATGATCAGAATACTGGGCGACCACGAGGATTTGGCTTTATTTCATTTGATAATGAGGATGCGGTTGATAGGGTTTTGCACAAGTCATTTCATGATTTAAATGGTAAACAGGTAGAGGTAAAGCGTGCACTTCCCAAGGATGCTAATCCTGGTGCAAGTGGCCGTATGATGGGTGGTGCTGGAGGTGGTGGTGCTGGAATTGGTGGGTATCAAGGGTATGGGGCTTCTGGTGGCAGCCAAAATGCATATGATGGTCGTATGGATTCTAGTAGGTATATGCAGCCTCAAAGTGCTGCCGGTGGATTCCCACCTTATGGTTCTTCTGCCTATAGTGCTCCTGGATATGGGTATGGTTCAGCTAACAATGGTATTGGTTATGGTGCATATGGAAGTTATGGTGGCGCCACTGCTGGGTATGGTGGACCTGCTGCTGCAACTTATGGGAACCCAAATGTCCCTAATGCTGCTTATGCTGGTGCTCCACCAGGTGGCCCCAGGAGTTCATGGCCTGCTCAGGCTGCCTCTGGTTATGGGTCTATGGGCTATGGGAATACTGCTCCTTGGGGCGCTCCAACTGGTGGTGCTGGATCTGGTGGTGGTGGCCCTGGTTCAGCAACTGCAGGTCAATCCCCTAGTGGAGCTACTGGATATGGGAATCAAGCTTATGGATATGGTGGGTACGGTGGGTATGGGGGAAGTGATAGTTCTTATGGAAATCCAGGTGTGTATGGTGCTGTTGGAGGGCGCACTGGGAGTACCCCAAATAGTAATGCCAGTGGTCCTGGTGGGAGTGAGCTACAAGGTAGTGGTGGCAGTGGTAGTTATATGGGTAGTGGCTATGGGGATGCAAATGGAAATTCAGGTTATGGAAATGCAGCTTGGAGATCTGAACAAGCTCAAGCAACTGGAAATTATGGGACTCCTCAGGGAAATGGCTCCCATGGTGGGCAAGTTGGTTATGGTGGAGGCTATGGCGGTGCTCAGTCTCGACAAGCCCAACAACAGTAA 1440 0.4861 MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAGNPNSGMNSGNGGNVRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDNEDAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRMMGGAGGGGAGIGGYQGYGASGGSQNAYDGRMDSSRYMQPQSAAGGFPPYGSSAYSAPGYGYGSANNGIGYGAYGSYGGATAGYGGPAAATYGNPNVPNAAYAGAPPGGPRSSWPAQAASGYGSMGYGNTAPWGAPTGGAGSGGGGPGSATAGQSPSGATGYGNQAYGYGGYGGYGGSDSSYGNPGVYGAVGGRTGSTPNSNASGPGGSELQGSGGSGSYMGSGYGDANGNSGYGNAAWRSEQAQATGNYGTPQGNGSHGGQVGYGGGYGGAQSRQAQQQ* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2063 479 MobiDBLite consensus disorder prediction 392 479 - -
Lja5g2063 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Lja5g2063 479 MobiDBLite consensus disorder prediction 393 458 - -
Lja5g2063 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Lja5g2063 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lja5g2063 479 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 477 - -
Lja5g2063 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lja5g2063 479 MobiDBLite consensus disorder prediction 337 356 - -
Lja5g2063 479 Gene3D - 4 88 IPR012677 -
Lja5g2063 479 SUPERFAMILY RNA-binding domain, RBD 110 218 IPR035979 GO:0003676
Lja5g2063 479 Gene3D - 107 231 IPR012677 -
Lja5g2063 479 MobiDBLite consensus disorder prediction 84 109 - -
Lja5g2063 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lja5g2063 479 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Lja5g2063 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lja5g2063 479 SMART rrm1_1 113 185 IPR000504 GO:0003723
Lja5g2063 479 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2063 Lja-Chr5 27311737 27315819 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2063 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 24.000 8.64e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2063 K14411 - gmx:100811267 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2063 5 27311737 27315819 Lja5g2063 5 27311737 27315819 ECH