Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2057 ATGGCACCTTCACAACCACGATCCAAACGAAACACCACCACGATCACGATGGAGAAGAAGAAAACGCAAGCAGACAAACGACGCAATCAATTGTCGTTCTCCAAGCGGAGGAACGGCCTCTTCAACAAGCTCACCGAGCTCTCCATTCTCTGCCAATCGGAAACCGCATTGATCGTCACCTCAAAGAACAACGACGGCGGCGGCGGTGAGATCTTCGCGTGCGGTTACCCCTCGCCGGACGCTGTTATACGGCGGTTTCTCACTGGAGGGAAGGCGCCGCTCCCCGCCCAGCGGTGGCGGGAGGAGAAGGTGGAAGCCCATAGGTCTGAGTATGAGGGTATGCAGGAACGGTTGAAAGAAGAGCAGAGGAAGCTGCAAGCGATTATTGAGGAGAAAGAGAATAAGGGTTTTGTGTTTCCTTCTTGGTGGGAAACCCCCATTGACGACATGGGTTTGGATAGTGTTGAACAGTTGAAGAATTCTATGGAGATTTTGAAGCTTAACCTGATTGCGCGCCAAAGGTACTGTGAGATGATTCCGCTGGTGGCTCCTCCTCCTCCTCCGCCTCAGGCGATGGCTGCTCTGCCCCCGCAGCCGCCATTGACGAACTCGCCGCCGGGCTTTCTTGAAGCACTGTGGTATCTAGCTGATGGAGGCTAG 660 0.5455 MAPSQPRSKRNTTTITMEKKKTQADKRRNQLSFSKRRNGLFNKLTELSILCQSETALIVTSKNNDGGGGEIFACGYPSPDAVIRRFLTGGKAPLPAQRWREEKVEAHRSEYEGMQERLKEEQRKLQAIIEEKENKGFVFPSWWETPIDDMGLDSVEQLKNSMEILKLNLIARQRYCEMIPLVAPPPPPPQAMAALPPQPPLTNSPPGFLEALWYLADGG* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2057 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 64 IPR002100 GO:0003677|GO:0046983
Lja5g2057 219 ProSiteProfiles MADS-box domain profile. 25 64 IPR002100 GO:0003677|GO:0046983
Lja5g2057 219 Coils Coil 104 135 - -
Lja5g2057 219 MobiDBLite consensus disorder prediction 13 28 - -
Lja5g2057 219 PANTHER MADS BOX PROTEIN 16 178 - -
Lja5g2057 219 MobiDBLite consensus disorder prediction 1 28 - -
Lja5g2057 219 SUPERFAMILY SRF-like 21 88 IPR036879 GO:0003677|GO:0046983
Lja5g2057 219 Gene3D - 25 136 IPR036879 GO:0003677|GO:0046983
Lja5g2057 219 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 16 178 - -
Lja5g2057 219 SMART madsneu2 17 77 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2057 Lja-Chr5 27229970 27231961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2057 15 166 Type I MADS-box Gene Family AT5G60440 31.677 5.80e-18 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja5g2057 SRF-TF 7.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2057 - - lja:Lj0g3v0332129.1 389.808