Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2052 ATGTTGCAGGATGTTTTTGATCAGCAACAACAACTGTCGCCAAAGGCGGCGGCCGAGGAGCAACACCAACTTCCCATTGACGAAATTTCAAGCCCTCTTAGTGCTCGAATTTTCGAACTATGTAACTCTGAATTGTTCCCAGAGGCTTTGCAGAATTCTGAGGTTACATCCAGCTCAAATTGCTGCTATGAAGAGAACTCCTCATATGCAACAAACACATCTTTAGCTATAGATGTAGAAACCAAGTTCAATAGCAATAACACAGTCACCACTCCAACTAGCACTACTACCACCGCCACCACCGCCGCCGCCAACACCACCAACAACAACAACAGTAGTAACCTCTCTGTGATCTTTGACTCCCAAGAAGATATTGACAATGATATATCTGCCTCCATAGATTTCACACTCTCTCCAGCCTTCAATGTGGGACCATTTGCCCCATCCCAGCAAGAACAACACTTTGATTTCTCTTCTGTGCAGCAAAATCAGGTTCAACTCACAGCAAGTTCTGTTGTGGAGGGCTTCTCTCACTCTCAGTATCCACCTGACCCAGTTGCACCTCTCATGGGAGCATCATTGCCACCTGTTTTTGAAGAGGATTGCATAACTTCTGTGCCTTCTTATATGCCTCTGAACCCTTCTTCTCCTTCTTGCGCTTATCTCGGTCCCGGCATGGCGGCGTATATGCCTCCTCCTGGTGCACTTAACACTGCTTTATCGGCTGAGAGTTGTGGATTGTATGGTGGGAACATTCTTCTGGGTCCTGAAATTCAGACACAGGAACTGGAATACCAGGGAGAAAATGGAAGACTTTATTGTACAGATTCAATTCAGAGGGTGTTTAATCCTCCAGACCTTCAGGCACTTAGTACTGAGAGCCAGCAACTAGTAGCTGGGGCTGGGAGTTCTGCCACTCTGACACCAGAAATCTCAAACTTGGAGGATTCCACCTTCAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAGGAAAAGATTCATAGATACATGAAGAAAAGAAATGAGAGAAACTTCAGCAAGAAAATTAAGTATGCATGCCGCAAAACTCTGGCAGATAGCCGACCTCGGGTTAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGATGCCAATAGAGCTGCTGGTAGCAATCATGAAGAAGATGATGAAGAAGAAGTAGTTGTGAAAGATGAAGATGATATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGGGTGAACTCCTTCAAATGCAACTATTCCATCCAGTCATGGATTTGA 1284 0.4478 MLQDVFDQQQQLSPKAAAEEQHQLPIDEISSPLSARIFELCNSELFPEALQNSEVTSSSNCCYEENSSYATNTSLAIDVETKFNSNNTVTTPTSTTTTATTAAANTTNNNNSSNLSVIFDSQEDIDNDISASIDFTLSPAFNVGPFAPSQQEQHFDFSSVQQNQVQLTASSVVEGFSHSQYPPDPVAPLMGASLPPVFEEDCITSVPSYMPLNPSSPSCAYLGPGMAAYMPPPGALNTALSAESCGLYGGNILLGPEIQTQELEYQGENGRLYCTDSIQRVFNPPDLQALSTESQQLVAGAGSSATLTPEISNLEDSTFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDANRAAGSNHEEDDEEEVVVKDEDDMVDSSDIFAHISGVNSFKCNYSIQSWI* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2052 427 MobiDBLite consensus disorder prediction 1 24 - -
Lja5g2052 427 MobiDBLite consensus disorder prediction 368 386 - -
Lja5g2052 427 ProSiteProfiles CCT domain profile. 329 371 IPR010402 GO:0005515
Lja5g2052 427 MobiDBLite consensus disorder prediction 1 17 - -
Lja5g2052 427 Pfam CCT motif 329 371 IPR010402 GO:0005515
Lja5g2052 427 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 26 427 - -
Lja5g2052 427 PANTHER CCT MOTIF FAMILY PROTEIN 26 427 - -
Lja5g2052 427 MobiDBLite consensus disorder prediction 368 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2052 Lja-Chr5 27168840 27172827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2052 309 382 C2C2-CO-like Transcription Factor Family AT5G24930 39.189 1.62e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja5g2052 CCT 5.7e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2052 - - aprc:113871720 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2052 5 27168840 27172827 Lja5g2052 5 27168840 27172827 ECH