Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2049 ATGAGCGACTTAAGGGTGAGTGGTCAGGTGAAGTGGTTCAATGACCAGAAGGGTTTCGGGTTCATCACCCCTGATGATGGAGGCGATGATCTCTTTGTTCACTGGTCCGAGATTAAATCCGAAGGGTTTCGGAGCCTTAGTGAAGGAGAGCCCGTTGAGTTCATTGTCAATTCCAATCCCGATGGTCGTGCTAAGGCCGTTGATGTGACCGGTCCCAATCAGGCACCAGTCCAGGGAACCCGCAACGGTGGTCGAGGATGCGGTGGATATGGTGGTGGTGGAAGAGGAAGCAGTGGTTATGGCAGAGGGAACAGGTATGGCGGCGGGAGGTATGGCGGCGGGTATGGCGGTGGATACGGTGGCAGTGGAAGAGGAGGCAGTGGTTACGGTGGAGGCAACGAGTATGGTGGAGGCATTGGATACGGTGTAAGTGGAGGCGGTAGAGGTGGAGGTGGCGGTGCGTGTTACAACTGTGGTGAAGAGGGTCACTTGGCTCGCGATTGCGGAAACAGTAGCGGTGGAGGCAGGTACAGAGGCGGCGGTGGTGGCGGTGGAATCTTACATGTGGTAATTCTGGGCATTTCGCGAGAGACTGCCCTTCCAGTGCCCGTTGAAGCTTTTGCTTTGTCTATGATATTTTTATTTTAA 648 0.5463 MSDLRVSGQVKWFNDQKGFGFITPDDGGDDLFVHWSEIKSEGFRSLSEGEPVEFIVNSNPDGRAKAVDVTGPNQAPVQGTRNGGRGCGGYGGGGRGSSGYGRGNRYGGGRYGGGYGGGYGGSGRGGSGYGGGNEYGGGIGYGVSGGGRGGGGGACYNCGEEGHLARDCGNSSGGGRYRGGGGGGGILHVVILGISRETALPVPVEAFALSMIFLF* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2049 215 Gene3D - 147 178 - -
Lja5g2049 215 SMART csp_8 7 72 IPR011129 GO:0003676
Lja5g2049 215 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Lja5g2049 215 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Lja5g2049 215 SUPERFAMILY Nucleic acid-binding proteins 4 71 IPR012340 -
Lja5g2049 215 PANTHER COLD SHOCK PROTEIN 2 1 197 - -
Lja5g2049 215 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Lja5g2049 215 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Lja5g2049 215 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Lja5g2049 215 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 197 - -
Lja5g2049 215 MobiDBLite consensus disorder prediction 70 90 - -
Lja5g2049 215 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Lja5g2049 215 Gene3D - 2 83 IPR012340 -
Lja5g2049 215 SMART c2hcfinal6 154 170 IPR001878 GO:0003676|GO:0008270
Lja5g2049 215 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Lja5g2049 215 SUPERFAMILY Retrovirus zinc finger-like domains 146 175 IPR036875 GO:0003676|GO:0008270
Lja5g2049 215 ProSiteProfiles Zinc finger CCHC-type profile. 155 168 IPR001878 GO:0003676|GO:0008270
Lja5g2049 215 Pfam Zinc knuckle 154 168 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2049 Lja-Chr5 27101401 27102048 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lja5g2049 CSD 6.7e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2049 - - vvi:100259004 125.946