Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja5g2049 | ATGAGCGACTTAAGGGTGAGTGGTCAGGTGAAGTGGTTCAATGACCAGAAGGGTTTCGGGTTCATCACCCCTGATGATGGAGGCGATGATCTCTTTGTTCACTGGTCCGAGATTAAATCCGAAGGGTTTCGGAGCCTTAGTGAAGGAGAGCCCGTTGAGTTCATTGTCAATTCCAATCCCGATGGTCGTGCTAAGGCCGTTGATGTGACCGGTCCCAATCAGGCACCAGTCCAGGGAACCCGCAACGGTGGTCGAGGATGCGGTGGATATGGTGGTGGTGGAAGAGGAAGCAGTGGTTATGGCAGAGGGAACAGGTATGGCGGCGGGAGGTATGGCGGCGGGTATGGCGGTGGATACGGTGGCAGTGGAAGAGGAGGCAGTGGTTACGGTGGAGGCAACGAGTATGGTGGAGGCATTGGATACGGTGTAAGTGGAGGCGGTAGAGGTGGAGGTGGCGGTGCGTGTTACAACTGTGGTGAAGAGGGTCACTTGGCTCGCGATTGCGGAAACAGTAGCGGTGGAGGCAGGTACAGAGGCGGCGGTGGTGGCGGTGGAATCTTACATGTGGTAATTCTGGGCATTTCGCGAGAGACTGCCCTTCCAGTGCCCGTTGAAGCTTTTGCTTTGTCTATGATATTTTTATTTTAA | 648 | 0.5463 | MSDLRVSGQVKWFNDQKGFGFITPDDGGDDLFVHWSEIKSEGFRSLSEGEPVEFIVNSNPDGRAKAVDVTGPNQAPVQGTRNGGRGCGGYGGGGRGSSGYGRGNRYGGGRYGGGYGGGYGGSGRGGSGYGGGNEYGGGIGYGVSGGGRGGGGGACYNCGEEGHLARDCGNSSGGGRYRGGGGGGGILHVVILGISRETALPVPVEAFALSMIFLF* | 216 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja5g2049 | 215 | Gene3D | - | 147 | 178 | - | - | |
Lja5g2049 | 215 | SMART | csp_8 | 7 | 72 | IPR011129 | GO:0003676 | |
Lja5g2049 | 215 | ProSitePatterns | Cold-shock (CSD) domain signature. | 19 | 38 | IPR019844 | - | |
Lja5g2049 | 215 | CDD | CSP_CDS | 6 | 71 | IPR002059 | GO:0003676 | |
Lja5g2049 | 215 | SUPERFAMILY | Nucleic acid-binding proteins | 4 | 71 | IPR012340 | - | |
Lja5g2049 | 215 | PANTHER | COLD SHOCK PROTEIN 2 | 1 | 197 | - | - | |
Lja5g2049 | 215 | PRINTS | Cold shock protein signature | 44 | 62 | IPR002059 | GO:0003676 | |
Lja5g2049 | 215 | PRINTS | Cold shock protein signature | 8 | 23 | IPR002059 | GO:0003676 | |
Lja5g2049 | 215 | PRINTS | Cold shock protein signature | 29 | 38 | IPR002059 | GO:0003676 | |
Lja5g2049 | 215 | PANTHER | COLD SHOCK DOMAIN PROTEIN 2 | 1 | 197 | - | - | |
Lja5g2049 | 215 | MobiDBLite | consensus disorder prediction | 70 | 90 | - | - | |
Lja5g2049 | 215 | Pfam | 'Cold-shock' DNA-binding domain | 7 | 71 | IPR002059 | GO:0003676 | |
Lja5g2049 | 215 | Gene3D | - | 2 | 83 | IPR012340 | - | |
Lja5g2049 | 215 | SMART | c2hcfinal6 | 154 | 170 | IPR001878 | GO:0003676|GO:0008270 | |
Lja5g2049 | 215 | ProSiteProfiles | Cold-shock (CSD) domain profile. | 5 | 71 | IPR002059 | GO:0003676 | |
Lja5g2049 | 215 | SUPERFAMILY | Retrovirus zinc finger-like domains | 146 | 175 | IPR036875 | GO:0003676|GO:0008270 | |
Lja5g2049 | 215 | ProSiteProfiles | Zinc finger CCHC-type profile. | 155 | 168 | IPR001878 | GO:0003676|GO:0008270 | |
Lja5g2049 | 215 | Pfam | Zinc knuckle | 154 | 168 | IPR001878 | GO:0003676|GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja5g2049 | Lja-Chr5 | 27101401 | 27102048 | Transposed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | CSD | Lja5g2049 | CSD | 6.7e-25 | CL0021 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja5g2049 | - | - | vvi:100259004 | 125.946 |