Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2038 ATGGGCCGCGGAAGAATACCTATGGAACCAATTCAGAACGAGAAAACTCGCAGGACAACATTCCTGAAGAGAAGAGATGGTTTGATGAAGAAAGTGAAGGAGCTTTCCATTCTTTGTGATGTTAATGCTTGTTTAATCATGTATGCTGAAGGACTTGATGAACCACAAACATGGCCTAAAAAAGACACAGAGGTACAATGTATCATTCAAAAATACTGCAATACAGCTAATGATAGGCGTCCTAAGATCTATGATGTGCATGAGTACTATAAAGATAAGGTGAAAAAAATTGAAGCTGAGATTTCCAAAGTGCACAAGGAGGAGCTTAAGATCTTGTACCCAACTTGGGATGACAGTTTCAATAATCTTGGAGAGGAGCAATTGAGGAGTTTTATTAGCAAGCTGGATGCTAAGCTTGATGCTTGTAATCAAAAGATAAATATCTTGAAAGGAGATCACGATCATAGGGGAAAAGAAAAAGCAAGAGAGATTGTCACAGTTTCCCGAACCGGCTATGAGACACAGGTTACTCCTCCGCCCTACTTGGCCTCAAATCCTATGAATCAACTCAATGGTCTCATGATGCAAAACATGTCTCAAGCTCAAGTTTTCCAACCTCCTCCCCCTATGAATATGTTGAAGGCAAACAATGATAGAAACCTATTTCATAACTTTGGCCAGAGTTCTCAACCACCTTCATTGCATCATTTTGGTCAAAATCGAAGGGTGGATTGGGCTGATCAAGTGCGTGCTCTTTCTTATGATCCCACAACTGGTACGAACTATGATAAAAACAAGTTAGCAGTTTTCCCATTTCACCATGGCCAGAGTTCTCAATCACCACCTTCCTTGCTTAATTTTGGTCAAAATGGAAGGGTGGATTGGGCTAATCAAGTTGGTGCTCTTGCTAATTATGATCCCACAACTGGTATGCTTATAAATGGAGTTCGAGCTGAAAATAATCAAAACATCTCACAATGCTATTGCAATGGAAATATGCAGAGGATGCAGCCATGTAGTATTGGTAATTTGCATACTCAATATCCTGCTCAAATAAAGTCGAAGGAAGAAGAAGCTTTTTTATCATATGTACCACCTGGGTTCCAACCTAATGGATTTTATGGTACAGATGTTGTTCAAGCTCATATGTTCAGCCACATGCATGGATTTGGAAGGAAGTAG 1182 0.3993 MGRGRIPMEPIQNEKTRRTTFLKRRDGLMKKVKELSILCDVNACLIMYAEGLDEPQTWPKKDTEVQCIIQKYCNTANDRRPKIYDVHEYYKDKVKKIEAEISKVHKEELKILYPTWDDSFNNLGEEQLRSFISKLDAKLDACNQKINILKGDHDHRGKEKAREIVTVSRTGYETQVTPPPYLASNPMNQLNGLMMQNMSQAQVFQPPPPMNMLKANNDRNLFHNFGQSSQPPSLHHFGQNRRVDWADQVRALSYDPTTGTNYDKNKLAVFPFHHGQSSQSPPSLLNFGQNGRVDWANQVGALANYDPTTGMLINGVRAENNQNISQCYCNGNMQRMQPCSIGNLHTQYPAQIKSKEEEAFLSYVPPGFQPNGFYGTDVVQAHMFSHMHGFGRK* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2038 393 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Lja5g2038 393 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Lja5g2038 393 PANTHER MADS BOX PROTEIN 3 270 - -
Lja5g2038 393 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Lja5g2038 393 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja5g2038 393 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Lja5g2038 393 CDD MADS_SRF_like 2 64 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lja5g2038 393 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja5g2038 393 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja5g2038 393 PANTHER PROTEIN, PUTATIVE-RELATED 3 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2038 Lja-Chr5 26794475 26795656 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2038 1 139 Type I MADS-box Gene Family AT5G55690 35.862 7.51e-21 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja5g2038 SRF-TF 1.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2038 - - lja:Lj0g3v0235659.1 353.599