Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2035 ATGGCAAGAAACATGGTTTGTGGTGTTACAGAAGATGATGGATGGAGGAAGGGACCTTGGACTGCTGAGGAGGACAGATTACTCATTGAATATGTCACACTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTACAGGACTGAAAAGGAATGGGAAGAGCTGCAGGTTAAGATGGGTGAATTACCTGAGACCAGACCTCAAGAAGGGTCACATAACACCACAGGAAGAAAGCGTCATTCTAGAGCTGCATGCCAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAACTTGCCAGGAAGAACTGACAATGAGATCAAGAATTATTGGAGGACCCATTTCAAGAAAAGGCCGAAAAATCCCTCTAATGCTGCGGAAAAGGCAAAAACTCGTCCCTTGATGAGGCAGCAATATCGACTGCAACGACAGAACTTGAAGCAACAGCAAGTTCAGCAGCAACAACAACTTCAATTCAACTTGGACATGAAAGGGATCATAAACTTGCTTGAAAAAAATGACCCTTATATACCTCAAGAGACACAAGAGATGGTCAACATGTACCCAAGCACACCAGAACAGCGTGGCTATTTAGACTCTATGCTGAATGGTAATTTCTCTGCACAAGAGTCCTCAGATGAAGAAATTTTGTGGGATGGGCTATGGAACTTGGATGATGTTCTTGGCAATTCAATGCAGCTAGTGCTATAA 711 0.4416 MARNMVCGVTEDDGWRKGPWTAEEDRLLIEYVTLHGEGRWNSVARLTGLKRNGKSCRLRWVNYLRPDLKKGHITPQEESVILELHARWGNRWSTIARNLPGRTDNEIKNYWRTHFKKRPKNPSNAAEKAKTRPLMRQQYRLQRQNLKQQQVQQQQQLQFNLDMKGIINLLEKNDPYIPQETQEMVNMYPSTPEQRGYLDSMLNGNFSAQESSDEEILWDGLWNLDDVLGNSMQLVL* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2035 236 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Lja5g2035 236 Gene3D - 17 69 - -
Lja5g2035 236 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Lja5g2035 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Lja5g2035 236 Gene3D - 74 118 - -
Lja5g2035 236 PANTHER MYB TRANSCRIPTION FACTOR 2 232 - -
Lja5g2035 236 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Lja5g2035 236 CDD SANT 19 64 IPR001005 -
Lja5g2035 236 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 232 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lja5g2035 236 SMART sant 16 66 IPR001005 -
Lja5g2035 236 SMART sant 69 117 IPR001005 -
Lja5g2035 236 Coils Coil 136 156 - -
Lja5g2035 236 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Lja5g2035 236 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Lja5g2035 236 CDD SANT 74 115 IPR001005 -
Lja5g2035 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2035 Lja-Chr5 26626768 26628518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2035 15 234 MYB Transcription Factor Family AT4G13480 58.974 6.25e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja5g2035 Myb_DNA-binding 5.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2035 K09422 - gmx:100782089 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2035 5 26626768 26628518 Lja5g2035 5 26626768 26628518 ECH