Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2031 ATGGACCAGGAAGAGCACGAGGTCTACGGCGCCGACATTCCCGATGAGGAGGTGGAGATGGACGCCGACGCCGACGCCGACGCCGAACAACAAGACCACGATTTCGCCTCCAATCACCCAAACAAGGACTTGGAGGACATGAAGAAGAGGTTGAAGGAGATCGAGGAAGAAGCTAGCGCGCTTCGCGAGATGCAAGCCAAGGTTGAGAAAGACATGGGTGCTGTTCAAGATGCTGGCTCTTCTGCAACTCAAGCTGAAAAGGAGGAAGTGGATGGTCGATCAATCTATGTTGGCAATGTTGACTATGCATGTACACCAGAAGAAGTCCAACAGCATTTTCAGTCATGTGGAACTGTGAACAGAGTGACAATATTGACAGACAAATTTGGTCAACCAAAAGGATTTGCTTATGTAGAGTTTGTTGAGGCTGAGGCTGTTCAGAATGCTGTCATGTTAAATGAATCAGAATTGCATGGTCGGCAACTGAAGGTGTCTGCTAAGCGTACAAATGTTCCTGGAATGAAACAGTATTTTGGAAGAAGGCCAGCTGGCTTCAGATCTAGGAGGCCCTTCATGCCTTATGCACCATTCTATCCACCATATGCTTACGGAAGATCTCCGAGGTATAGAAGACCCATGCGATACAGGCCATACTAG 657 0.4825 MDQEEHEVYGADIPDEEVEMDADADADAEQQDHDFASNHPNKDLEDMKKRLKEIEEEASALREMQAKVEKDMGAVQDAGSSATQAEKEEVDGRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAVQNAVMLNESELHGRQLKVSAKRTNVPGMKQYFGRRPAGFRSRRPFMPYAPFYPPYAYGRSPRYRRPMRYRPY* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2031 218 Coils Coil 41 71 - -
Lja5g2031 218 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 217 - -
Lja5g2031 218 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 217 - -
Lja5g2031 218 CDD RRM_II_PABPs 94 165 - -
Lja5g2031 218 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 169 IPR000504 GO:0003723
Lja5g2031 218 MobiDBLite consensus disorder prediction 29 50 - -
Lja5g2031 218 MobiDBLite consensus disorder prediction 1 28 - -
Lja5g2031 218 SUPERFAMILY RNA-binding domain, RBD 82 190 IPR035979 GO:0003676
Lja5g2031 218 SMART rrm1_1 94 165 IPR000504 GO:0003723
Lja5g2031 218 MobiDBLite consensus disorder prediction 1 50 - -
Lja5g2031 218 Gene3D - 11 175 IPR012677 -
Lja5g2031 218 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 163 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2031 Lja-Chr5 26588860 26592433 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2031 94 165 Eukaryotic Initiation Factors Gene Family AT2G36660 38.356 1.99e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2031 K14396 - gmx:100527139 328.561