Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2020 ATGGCGGATGCACCAACCAGCCCCGTCGGCGGGAGTCACGAGAGTGGCGGCGAGCAGAGTCCGCGTGGTTCAGCGCGGGAACAGGACCGGTACCTGCCAATTGCCAATATCAGCCGGATCATGAAGAAGGGTTTGCCGGCTAATGGGAAGATTGCTAAGGATGCTAAGGATACCATGCAGGAATGTGTTTCTGAATTCATCAGCTTTATTACCAGCGAGGCGAGTGAGAAATGCCAGAAAGAGAAGAGAAAGACCATTAATGGAGATGATTTGCTGTGGGCGATGGCTACGTTAGGATTTGAAGACTATATAGAGCCGCTCAAGTTGTACCTAGCAAGGTACAGAGAGTTGGAGGGTGACACTAAAGGATCTGCTAGAAGTGGTGATGGATCTGGTAGACGAGATCAAGTTGGAATTGCAGGTCAAAATGCTCAGCTTGTTCATCAGGGTTCGCTGAACTATATTGGTTCCCAGGCCCCGGGGGCTTGGTTTGAGCACCTTGATGCACTCCAATCAACTTCAGATTCCGGCCTAGTGCAGCCACAGCATCTGGTCATGCCCTCAATGCAAAGCCATGAATAG 582 0.5086 MADAPTSPVGGSHESGGEQSPRGSAREQDRYLPIANISRIMKKGLPANGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKLYLARYRELEGDTKGSARSGDGSGRRDQVGIAGQNAQLVHQGSLNYIGSQAPGAWFEHLDALQSTSDSGLVQPQHLVMPSMQSHE* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2020 193 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lja5g2020 193 MobiDBLite consensus disorder prediction 1 30 - -
Lja5g2020 193 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Lja5g2020 193 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 152 - -
Lja5g2020 193 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 152 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lja5g2020 193 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Lja5g2020 193 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Lja5g2020 193 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Lja5g2020 193 Gene3D Histone, subunit A 19 152 IPR009072 GO:0046982
Lja5g2020 193 SUPERFAMILY Histone-fold 28 143 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2020 Lja-Chr5 26385513 26390801 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2020 7 159 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.000 2.23e-78 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lja5g2020 CBFD_NFYB_HMF 3.7e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2020 K08065 - gmx:100815883 292.737