Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2005 ATGTCCATCTCAATGCTAATGTGCAGACTAAGACAACCCTTAATAAACGTTCCCTGCAGTGGCAAAAAACTGAGCATGAGGCAGATTCAAAAGGAGAAGGTAGTGTTGGTGATGGGAGCTACAGGGACAGGAAAGTCAAAGCTCTCCATTGACCTCGCCACCTGTTTCCCCTCAGAAATCATCAACTCCGACAAGATTCAAATCTACGACGGCCTCGACATCGTCACCAACAAAATCTCCAAGGAAGAACAACGTGGAATCCCCCACCACCTCCTCGGAACTCAAAACCCTAACACAGACTTCACCGCCGGCGATTTCAGTGACTGTTCCACCGCCGCCATTGACGCAATCACAAGCCGCGACCACCTTCCGATCATCGCCGGAGGTTCGAACTCCTACCTGGAGGCGTTAATCGACGACGACGACTACAAATTCCGATCGAGGTACGACTTCTGCTGCCTCTGGGTCGACGTGGCAATGCCGGTGCTGGACTCATACGTGGCGGCGCGTGTGGATCAGATGCTCCGGAGCGGAATGGTGGAGGAGCTGAGACCGTTTTTCAACGCGAACGGCGACTACTCGAGAGGAATCAGAAGAGCGATTGGGGTTCCTGAATTCGACGAGTATTTCCGGCGGGAAGGGTTCGCCGATGAGGAAACGAGGAAATTGTTACTGGAGCGAGCGGTGAGGGAGATGAAGGTGAACACGTGCAAGCTCGCGAGGAGGCAATTGGGGAAGATTCAGAGGCTGAGGAATGTGAAGAGGTGGGAGATTCACCGTGTTGATGCGACGCCGGTGTTTCGGAAGCGTGGGGAGGAGGCTGATGAGGCGTGGCGGAAGGTGGTGGCAGAGCCTAGTGCTATGATCGTAGCGCAGTTTCTGTATAAGGCAAAGAGTGATGTGAATGTTGTTTCTGGCGGTTTCAGAGTGCCGGCGGGTTCAACGGAGAGTGTTATGGCGGCGGCGACGTGTTAG 975 0.5405 MSISMLMCRLRQPLINVPCSGKKLSMRQIQKEKVVLVMGATGTGKSKLSIDLATCFPSEIINSDKIQIYDGLDIVTNKISKEEQRGIPHHLLGTQNPNTDFTAGDFSDCSTAAIDAITSRDHLPIIAGGSNSYLEALIDDDDYKFRSRYDFCCLWVDVAMPVLDSYVAARVDQMLRSGMVEELRPFFNANGDYSRGIRRAIGVPEFDEYFRREGFADEETRKLLLERAVREMKVNTCKLARRQLGKIQRLRNVKRWEIHRVDATPVFRKRGEEADEAWRKVVAEPSAMIVAQFLYKAKSDVNVVSGGFRVPAGSTESVMAAATC* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2005 324 Pfam IPP transferase 67 140 - -
Lja5g2005 324 Pfam IPP transferase 145 244 - -
Lja5g2005 324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 142 IPR027417 -
Lja5g2005 324 Gene3D - 31 294 IPR027417 -
Lja5g2005 324 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 24 302 IPR039657 -
Lja5g2005 324 PANTHER TRNA DIMETHYLALLYLTRANSFERASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 24 302 - -
Lja5g2005 324 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 160 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2005 Lja-Chr5 26115276 26116332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2005 147 294 C2H2 Transcription Factor Family AT2G27760 30.857 9.21e-22 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2005 K10760 - gmx:100803964 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2005 5 26115276 26116332 Lja5g2005 5 26115276 26116332 ECH