Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2004 ATGGAAGGACAAAGTGACCCAGAGAACCCAGTGCTGCAAGGGTCTTATGACACTGGAGGAACAAGCAATGATGTATCTTATTCAGCTGAGGATCATCTATTTCCAACCCCAAAATTTAACCTTTCAGCATCTGGGAGGAGTTGTAGCCAGTGGACTAGTCTCCCCAAAGTGTCAAAACCATCTCATAATTATGTTGAATATCTTTCAGAATCTTCAACTTATCTACCAAATGCCACACCTGAATATATGATTGGGAGCAGTTATCTACCTCTTGGAGGGGTCAATGGAACAGAAAGAAACTTGTTTTGCAGTGATCCAGGAAATGCTTGTGGTTTTAAATGCATTGATTCTTCAAGTTCAAGCAATGACTTTGACATTAGGAAGCGTATGGGGTTTTGGAAACCTGATGGAGGAGATGAAGCAATTGCAGTTGAAACTGAAAGTAGTCAAAATCTTCTTTATGCTGAGAGTCGAGCTCCATGGATGATGGTAGATTCAATTGGAAATAAGCACAATGCTTCACAGTTTGATCCAATGGGAATGCTTGGAGCACCCACTTTCCTTCCCAAAAACCCCAAACCAGGATGCAGCTCTTCAAAACAGAAACCTGATCAATCACGTTTCACTGACCGTCATCGCAGGCAACGCATTGCTGAAAACCTCAAAGCTTTGCATGAATTGCTTCCAAATCCAGCAGAGGGTAGTCAAGCTCAAGCATACATACTTGACGATATCATTGACTATGTCAAATATTTGCAGCATCAAATAAAGGAACTAAGTGGAAGTCGATTGCAAGCTGACACAAATGCTATACCACTCTTTTTTCATGAGGGTTATGGGCATTATATGAACCAACAGATGCTGAATGAACCCCTTGAAGAGATAATGGGGAAACTACTTGAAGAACATCCAGCAGCAGCCAGTCAGCTACTTGAAAGTAAGGGTCTTTTCCTGGTGCCTATGGCTTTGGTTAGTGACTTGAATGAAGCTATGCAAGTGTTTGGCGGGAATGCACTTGTCTGA 1023 0.4203 MEGQSDPENPVLQGSYDTGGTSNDVSYSAEDHLFPTPKFNLSASGRSCSQWTSLPKVSKPSHNYVEYLSESSTYLPNATPEYMIGSSYLPLGGVNGTERNLFCSDPGNACGFKCIDSSSSSNDFDIRKRMGFWKPDGGDEAIAVETESSQNLLYAESRAPWMMVDSIGNKHNASQFDPMGMLGAPTFLPKNPKPGCSSSKQKPDQSRFTDRHRRQRIAENLKALHELLPNPAEGSQAQAYILDDIIDYVKYLQHQIKELSGSRLQADTNAIPLFFHEGYGHYMNQQMLNEPLEEIMGKLLEEHPAAASQLLESKGLFLVPMALVSDLNEAMQVFGGNALV* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2004 340 CDD bHLH_AtbHLH_like 209 260 IPR045239 -
Lja5g2004 340 Gene3D - 200 265 IPR036638 GO:0046983
Lja5g2004 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 252 IPR011598 GO:0046983
Lja5g2004 340 SMART finulus 207 258 IPR011598 GO:0046983
Lja5g2004 340 MobiDBLite consensus disorder prediction 188 212 - -
Lja5g2004 340 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 324 - -
Lja5g2004 340 MobiDBLite consensus disorder prediction 1 27 - -
Lja5g2004 340 Pfam Helix-loop-helix DNA-binding domain 210 253 IPR011598 GO:0046983
Lja5g2004 340 PANTHER TRANSCRIPTION FACTOR BHLH66-LIKE ISOFORM X1 13 324 - -
Lja5g2004 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 265 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2004 Lja-Chr5 26101022 26109198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2004 168 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 36.527 1.35e-19 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g2004 HLH 4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2004 - - cam:101507064 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2004 5 26101022 26109198 Lja5g2004 5 26101022 26109198 ECH