Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1995 ATGGATTCTGCCCTCAACAGCTCAATTGAAGAGGAAAACGAATGGGTGCCAACTTGTGCTGAAGAATTAAAGCCGAAGGTTGGACAACAATTCAATACATTAGAAGAAGGTGAAGAGTTTTACAAAAGGTATGCACATAATGCTGGATTTAGTGTTCGCTGCTCATCTGAAACTAAAGACAAAAATGGCGTGAAGCGCTGGAAGTATTTTGTTTGCTCAAAAGAAGGTTACCTACCAAATAAGACAGAAAGTGTGGTGCAAAGTGAATCCACAGTTAAGCTTAAGGCTAGAAGAAGGAGTAAATATGAACTTAATAAATTTCATGAAAGTCATACACATGCACTTGCTTCACCTATGAAGAGACAATTTTTACGATCAGCAAGAAAAGTGAATCCTGTGCACAAGAGTTTATTGCGTGCATATAATAGAGCAAATATTGGGCCTTCGAAAACTTACCACTTGTTGAAAGAGAAATTTGGGGGTTATCAAAATATTTTTAATCATTCTGCTCATAGATTTTGTATGTGGCACATTATGAAGAAAGTTTCTGAAAAAGTTGGTGTTTCATTGAATGCCAATGAGGAGTTCAACACTGATTTCAAGTCATGTATTTGGAGATCGGAGACAGCAAATGAATTTGAAACAACATGGAAATCTATCATTATTAGATTTCAATTACAAAAGAATGATTGGCTCTCACATATGTATGATATTCGAAGCATGTGGATCCCAGCTTACTTTAAAGATATTTTTTTAGCTGGGATATTGAGAACAACCTCAAGATCAGAAAGTGAGAATTCTTTCTATGGTAAATTTTTGAATCCTAATGTTAGTTTGGTTGAATTTTGGATGAGATTTGATTCTGCTATCGAAGCACAGAGGCAAAAGGAACTACTTGCAGATAATGATTCACTTCACTCACAACCAAAACTGAAGTTGAATCGCAATTTAGAAAAGCATGGATCAAATGTTTATACTCATGAGAACTTTTATAAGTTTCAGAAAGAGTTATGGATTGCATGTGTGGATTGTGGAGTTGAAAGCAAGAAAGAGGAGGGTGGACTGGAAATATTGCATATAATCGATAACAGTCACGCCAATGCTAAAATGCGAGAAGTGGCTTATAATCCTTCTAATCACAATGCAGAATGCTCTTGCAAAATGTATCAATCTCAAGGAATACCTTGTAGACACATACTTTGTGTTCTAAAAGGGAAAGGATTAAATGAGATCCCAAGTAATTACATTTTAAATAGGTGGACTAAGTTGGCAAATAGAAAACCTATTTTTGATACTGCTGAGAATGCATTGGAAATGTGTTCTAAACCAGAAAATGAGAGGAAGATCATTTCAGATGTATGGGATCACTTATTCAAGTGTGTGGAGAAGGCGGGAAATAGTAAAGAAAAATTGCTTTTCGTGATGAATGGAGTTATTGACATTGAAAAGCAATTGAACGAGTTTGAAGAGAATCCTGAACAAGATATGGCTGATGACTTGCAAACTTTTGTTGGATCCAATATTCCTAAAGAAGTGGAAATCCTTCCCCCACGGGTTTCAAAAACAAAGGGAAGTGGAAGACGAATCAAAGGTGGAAAAGAGAAGGCTGTAGAACAACAACAGAAAAGAACAAGGCTTTGTAGAACTTGTGGCGAACATGGAATTCATGACAGTCGTAACTGTCCCTCAAAAGCATCTTCCTAG 1704 0.3627 MDSALNSSIEEENEWVPTCAEELKPKVGQQFNTLEEGEEFYKRYAHNAGFSVRCSSETKDKNGVKRWKYFVCSKEGYLPNKTESVVQSESTVKLKARRRSKYELNKFHESHTHALASPMKRQFLRSARKVNPVHKSLLRAYNRANIGPSKTYHLLKEKFGGYQNIFNHSAHRFCMWHIMKKVSEKVGVSLNANEEFNTDFKSCIWRSETANEFETTWKSIIIRFQLQKNDWLSHMYDIRSMWIPAYFKDIFLAGILRTTSRSESENSFYGKFLNPNVSLVEFWMRFDSAIEAQRQKELLADNDSLHSQPKLKLNRNLEKHGSNVYTHENFYKFQKELWIACVDCGVESKKEEGGLEILHIIDNSHANAKMREVAYNPSNHNAECSCKMYQSQGIPCRHILCVLKGKGLNEIPSNYILNRWTKLANRKPIFDTAENALEMCSKPENERKIISDVWDHLFKCVEKAGNSKEKLLFVMNGVIDIEKQLNEFEENPEQDMADDLQTFVGSNIPKEVEILPPRVSKTKGSGRRIKGGKEKAVEQQQKRTRLCRTCGEHGIHDSRNCPSKASS* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1995 567 Pfam FAR1 DNA-binding domain 39 116 IPR004330 -
Lja5g1995 567 Pfam SWIM zinc finger 382 402 IPR007527 GO:0008270
Lja5g1995 567 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE ISOFORM X1 17 131 - -
Lja5g1995 567 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE ISOFORM X1 163 432 - -
Lja5g1995 567 ProSiteProfiles Zinc finger SWIM-type profile. 371 407 IPR007527 GO:0008270
Lja5g1995 567 SMART 26again6 382 409 IPR006564 GO:0008270
Lja5g1995 567 MobiDBLite consensus disorder prediction 520 540 - -
Lja5g1995 567 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 17 131 IPR031052 GO:0006355
Lja5g1995 567 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 163 432 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1995 Lja-Chr5 25941936 25944224 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja5g1995 FAR1 4.1e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1995 - - lja:Lj0g3v0232569.1 827.394