Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1989 ATGGTAAATCCTGTTTGGGAAGGAACAATGGCTGCGTCCACGCCGCTAGGTAGTTGTGGTAGTAGTAAACTTCAAAGCATGTTGCAGGGTGCGGTGCAATCTGTTCAGTGGACTTATAGCCTCTTCTGGCAACTTTGCCCACAACAAGTGATTCTGGTATGGGGTGATGGGTACTACAACGGAGCAATTAAGACTAGGAAGACAGTGCAACCAATGGAGGTTAGCACTGAGGAGGCATCACTCCAAAGAAGCCAGCAGCTTAGAGAGCTATATGATTCATTGTCCGCTGGAGAGACAAACCCCCCGACTCGCCGGCCTTGTGCCGCCTTGTCACCGGAGGATCTCACAGAATCTGAGTGGTTCTATTTGATGTGTGTCTCCTTCTCTTTCCCTCCTGGTGTCGGGTTGCCTGGAAAAGCATATGCCAGAAGGCAGCATTTATGGCTGACCGGGGCAAACGAGGTGGACAGCAAAACTTTTTCAAGAGCAATTCTAGCTAAGAGTGCTCGTATACAGACAGTGGTGTGCATTCCGGTATTAGACGGCGTCGTTGAATTGGGCACAACGGATAAGGTTCAAGAAGACCTTAATTTCATCCAACACGTGAGAGGCTTCTTCGCGGACCACCACCCGCTGACGCCAAAGCCCGCACTATCGGAGCATTCAACCTCTAACCCCACCACCTCCTCCACTGACCACATCCCTGCCATCATGTACACCATGGCAGACCCGCCCGCCGCCAATAACTCGAACCAAGATGACATGGACGAAGATGAGGAAGAAGATGACGATGAGGATGAGTCCGGCTCTGAAGACGAAACGGGACGGGCGCCCGAGATGGCAGCCACAGAGCCAAGCGAGCTGATGCAGATGGAGATGCCGGAGGAGATCCGTGTTGGGTCACCGAATGACGGGTCAAACAACTTAGACTCGGACTTCCACATGTTGGCGGTGAGCCAGCCGGGGTCGGGACAAGCCGAGTCTGCTCGAAGGTGGGGCCCGATCCAAGACCCCTTGGGATCGTTGCAGGCTCAACTACCGACTTCAGTGCTTAATCCACTAGAGGAGTTGACACAAGAAGACACTCACTACTCTCAAACAGTCTCCAACATCCTCCAAAACCAGTCCACCCGATGGTCCACCACCGGCTCAGTCACCTCCATCAGCCACATCACTTACTCCACCCAATCACCCTTCGCCAAGTGGACAATCCGTGCCGACCACCACTTCCACGCCGCCGCCGCAGCGGCGGCAGACGGCACCTCCCAATGGCTCCTCAAGTACATCCTCTTCACCGTCCCCTACCTCCACACCAAGAACCACGAAGACATCTCCCCACAAACTGCCTCCACCGGCGACCCCGCCGCCCGCCTCCGCGGGAACAAGGGCACCCCGCAGGACGAGCCCAGCGCCAACCACGTCCTTGCAGAGCGCCGCCGCCGCGAGAAGCTAAACGAGAGGTTCATCATTTTGAGATCTCTCGTCCCGTTCGTGACAAAAATGGACAAGGCTTCAATACTCGGCGATACCATCGAGTACGTGAAGCAGTTACGGAGGAAGATCCAGGAACTGGAAGCGCGTAACCTCCAGATAGAGGCGGAACAACAACGCTCCAGGACCAGCAAAGAGCTGCAGCCGCAGAGGAGCGGGGTGAGTTCTGTCGTGGTGGGGTCGGACAAGAAGAAGGTGAGGATCGTAGAAGCCAACGGTACCGCGAGGGCGAAGGCGGTGCCGGCGGCGGAGGTTGACGCTTCTGCAGAAGCTTCCACGTCGGTGCAGGTTTCGATCATTGAGAGTGATGCATTGCTGGAGCTGGAGTGTCCACACAGGGAAGGTTTGCTTCTGGATGTGATGCAGATGCTGAGGGAGATGAGGATAGAGGTGACTGGTGTTCAGTCTTCGTTGAATAATGGTGTGTTTGTGGCGGAGTTGAGGGCGAAGGTGAAGGAATATGTGAGTGGGAAGAAGGTTAGCATTGTGGAAGTGAAGAGGGCATTGAATCAAATCATACCACACACTAGAAATGTTTTAGTTTGA 2037 0.5469 MVNPVWEGTMAASTPLGSCGSSKLQSMLQGAVQSVQWTYSLFWQLCPQQVILVWGDGYYNGAIKTRKTVQPMEVSTEEASLQRSQQLRELYDSLSAGETNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHLWLTGANEVDSKTFSRAILAKSARIQTVVCIPVLDGVVELGTTDKVQEDLNFIQHVRGFFADHHPLTPKPALSEHSTSNPTTSSTDHIPAIMYTMADPPAANNSNQDDMDEDEEEDDDEDESGSEDETGRAPEMAATEPSELMQMEMPEEIRVGSPNDGSNNLDSDFHMLAVSQPGSGQAESARRWGPIQDPLGSLQAQLPTSVLNPLEELTQEDTHYSQTVSNILQNQSTRWSTTGSVTSISHITYSTQSPFAKWTIRADHHFHAAAAAAADGTSQWLLKYILFTVPYLHTKNHEDISPQTASTGDPAARLRGNKGTPQDEPSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQELEARNLQIEAEQQRSRTSKELQPQRSGVSSVVVGSDKKKVRIVEANGTARAKAVPAAEVDASAEASTSVQVSIIESDALLELECPHREGLLLDVMQMLREMRIEVTGVQSSLNNGVFVAELRAKVKEYVSGKKVSIVEVKRALNQIIPHTRNVLV* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1989 678 Pfam Helix-loop-helix DNA-binding domain 471 518 IPR011598 GO:0046983
Lja5g1989 678 MobiDBLite consensus disorder prediction 252 272 - -
Lja5g1989 678 PANTHER TRANSCRIPTION FACTOR TT8 23 672 - -
Lja5g1989 678 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 471 538 IPR036638 GO:0046983
Lja5g1989 678 Coils Coil 507 541 - -
Lja5g1989 678 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 24 206 IPR025610 -
Lja5g1989 678 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 468 517 IPR011598 GO:0046983
Lja5g1989 678 MobiDBLite consensus disorder prediction 442 474 - -
Lja5g1989 678 MobiDBLite consensus disorder prediction 217 232 - -
Lja5g1989 678 Gene3D - 466 544 IPR036638 GO:0046983
Lja5g1989 678 MobiDBLite consensus disorder prediction 532 551 - -
Lja5g1989 678 SMART finulus 474 523 IPR011598 GO:0046983
Lja5g1989 678 PANTHER TRANSCRIPTION FACTOR TT8 23 672 - -
Lja5g1989 678 MobiDBLite consensus disorder prediction 242 286 - -
Lja5g1989 678 MobiDBLite consensus disorder prediction 213 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1989 Lja-Chr5 25804704 25814206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1989 7 676 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 43.685 6.31e-166 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g1989 bHLH-MYC_N 3.4e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1989 - - gmx:100807157 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1989 5 25804704 25814206 Lja5g1989 5 25804704 25814206 ECH
Lja1g0697 1 6727937 6728920 Lja5g1989 5 25804704 25814206 PCT