Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1971 ATGAGGGAGGGGCTGAGATCTCGGTCGAGACCAGGGAAGGGTTCTGGTGGTGGAGGGGTTGTTCAGAAGAAAAGGGTTGGTGTTAAGGCTGAACCTTTTGACTTGGGTGGTGAAGGTTTAGGGGATTCGAGCTTAATGGTTGAGAAGAAGGGTGGGGTTGAAGAGCTTGACTTGGATTTGAAACTGGGGGGTGGGAGTGGTAATGTTGAACCAGCTGAGAATGGGGACGATAGGGTTTTTTTAAGTGGCGGGGGTAGCATTGAAGAAGCTGATGTTGATAGGAAGGGGGATGAGGTGTTGGTTGAGGGCGGAGTTGAATGTGGCGGGAAAGAAGAGCGTGACTTGGATTTGAATGTGAGTGGCGGGAGTGGTGATGTTGACTCAGCTGAGAATGGGAACGATAGGAGTTGTTTCAGTAGTGGGGGCAGCATTGAAGAAGCTGACGTTGGTAGGAAGGGGAATGGAGTGTTGGTTGGGGGTCGAGTGCTGCGCTCGAGGTCCAAGAGGGGAGATGATAAAATATCATATAAGGAAGATAATGATGATGTCTTTTCTGGGAGTGACAGAGAATGTGGTGGGTTTGAAAGGGTAAAAGTTAAGGAGGAGTCTGAAGGAACTGATGAATTATTGGGTGGTGGTGAGGATCAAAGGGTTATGGTAACAAAGGGAGGGCATGACAAGGTGAAATTGAAACGGAAGCGGGGGAGGCCTCCGAAAACTGAGTCGAAAGAGCAAAAGCAAGAGCAGTTAGTTGATCGGTTGACACGTAAGCGTGGGCATAAGCGTAAGCGTGGAAGACCCCCCAAGGTTGACCATCAAAACGATCTCTTGACAGTGGTGCATAATGATAAAGAAAAGGCAGGCCTTGTAGAACATGAAGAAGATTTAACTATAGGAGATGGTGCAAATGTGAATGCCATAGATGATATGTGCTCAGAGAGATCTTCTGGTAAAGAGTTAGAAGAACAGGGATTTTCTCCTGTCAACAAGAATAAAGTGGTAAAGGTTTTGAAAAATGATAAAAATGGGGTGACCTCACCGTTAAGATCAGATAATGTGAAGGGAACTGATGCTAATAAAAGGCAAAAGAGTAAAGAAAAGCAGTTAGTCAGGGATAAAATAATGGAGCGGTTGTCATCTGCTGGCTGGACTGTGGACTTTAGACCTAGAAATGGCAGAGGTTATGATGATTCGGTTTATGTCAGTCCAGATGGGAAGACACATTGGTCAATCACCTTGGCCTACAATAGGCTCAAAATGCTTTATGAAGCTGGTGATGGTGAAGGGAAAGTCTACGGGCCAGGTTTCAAATTTACACCAATACCAGAGGAGGAAATCAATTCACTAACCAGAATAGTTACCAAGACAAGAAATGATAAGTCCAAGCCAAGAAAAGATAAATCTGGGCCACTTGGGCGAAAGGGTGGAAAGACAGTTGATGGAGTCAATAGAAAACAGAAAAAGGAAAAACCAGGTTCTGGTGCAGTGAAGGGGAAAATGAAAAGAAAACGGTCACTTCTTGAGGAGGGGAAAACAAGTGTTGTGGTCAGGGATCATAAGCGACACAAGACACAAAACAAGAAGCGATGTGGTCTGTTGGTTCGCAATGCTAAGGAAGAGGTAGATTCAGAAACTGATGGATATGTTCCATACAGTGGTAAAAGAACTTTGCTTGCCTGGATGATTGATTCGGGCACAGTCCTCCAGAATGGGAAGGTCCATTATGTTCAACCTGGACGGAAATTTGATGGTAAGATCACAGGAGATGGCATTCATTGTGGCTGCTGCAATAAGATTCTAACAATTTCAGACTTTGAAGCTCATGCAGAAAGCAAAAACTTTGATCCTCTTAAAAATATATATATAGAGGAAGGAATTTCTCTCTTGCAGTGCCTGCAAGATTCATGGAATAAACAAGATGAATCTGAACGTAAAGGTTTTCGTTTAGTTGATATTGCCGGTGAAGATCCAAATGATGATACATGCGGTCTCTGTGGAGATGGTGGAGACCTGATCTGTTGTGATGGTTGCCCATCAACTTTTCATCAAAGCTGCTTGGATATAAAAAAGTTCCCATCTGGTGACTGGCACTGCAATTATTGCTGTTGCAAATTTTGTGGGTTGATTGGTGGAAGCTCAAATCAAAGCGAGACCCATGATGATTTTACTGTGTCTGCGTTACTCACATGCCATTTATGTGAGGACAAATATCACAGATCCTGTTTTGAGGCAAATGGTGCTATGACTCTTGATTTGAGGGACACTTTTTGTGGAAGCAGATGTCAAGAATTATCTGAGAGACTCGAAATGCTTCTTGGGGTTAAACATGAAATTGAAGATGGATTTTCTTGGTCTTTTATTCGGCGGTCGGATGTGTGCTTTGATGCTAGTCAGATTAAACCTCAGATTGTTGAATGTAATTCCAAGCTGGCTGTTGCAGTATCAATAATGGATGAGTGCTTCATGCCATATGTCGATCATAGAAGTGGGAGTAATCTGATTCATAGTATTCTATATAATTGTGGGTCAAACTTCAAACGTCTGAACTATAGTGGGTTTGTTACTGCAATTCTCGAGAGAGGTGATGAGATCATCGCTGCTGCTTCCATAAGGATCCATGGAAACCAACTTGCAGAGATGCCATTTATTGGGACCCGCTATATGTATAGGCGACAAGGAATGTGCCGCCAGCTTCTTAATGCCATTGAATCGGCACTCAGTTCTTTAAATGTTGAGTTATTGGTAATACCTGCTATCTCAGAGTTAAGAGAAACTTGGACCTCTGTTTTTGGGTTTGAGCCACTTGAATCTACGAGCAAGCAAATAACAAAGAACATGAGTCTGTTGGTATTCCCTCACGTAGATATGTTACAGAAGAAGATATCTAAGCACAAATTTGATGATGAAAATCTAATTACTACAGAAGTTTCCAATTTTAAGAAGAATCATACTACATCTATGGCAGCAAATAGGGATGGAGTGGGCTCATCCGGTTCTGATTTGATCAATTCTACTGGGATCCCTCTCTCTGTCACTTGTCAAGTTGTATGCCCGGCAGTTCAGGGAAATTGGGCTGGGGATGACAAAAGTACTGCAAATGCCTGTGAATATGTGACTGATTCTTGTTGCCAATCTGAAGATACAAGTAGATGTAAGAATACTAGTTGCACTTGCATGTTACTGAGCCATGACGAGAAGCCAATAGATTTGAACAGTGTTCCTGACAAGGAAAGGCATTGTCTCAGTTTGTGTCATGTCACTGAAGCTCCTGAAGGACATCAAGTTGGTGCTTTGTTGGAGGTTACTGAAAACTTTCCATGTGAGGTCAAAGTATCGTGTGAAGTCTTAAAAAACAGTGTTGAAAATCCTGCACCTTGTGGCGCAGAAAGCATTCCTACTGACTCTCCAGCTGTTTTCACGACAAGGGAATCAAAAGATTCTGCTGACACTATTCAGCATGGTTCACATGAGATTTCTGATAGTCGTGAACTGAGAAGTAAGGCTTGTGTTCAACCGGACTTTATAGGATCAGAAGTACTTGGTGAACCTGTCGATGATTGTGGCTCTCATTCTATACCCAATGGTGATTTGCCTGCTAATGGTGAAGAAGATTCTAGTGTTGTTAGCACGTCAAATGCAGAAGAAGTAGAATTATGTTCTGCCAAAACATCCGAGCTCCAAACAAACATAAATCTCAGAGATTGCAAATCCATACCAGTATCTTCAGGTGTTGGTGAGAAGATTGCAGATGGTGTCAATGAGAGGGATAGAGCATCTAGTGTAGCTGAGGCCAATATCCTTACCTCCAATGCTGACACTATTCCTGACGATCAGCCTGAGATGAAAGAATCTGCAGAGCTAGCTGAGCCTGATTTGCAGGTTGATCAAACTGCACGGAGCGACGCCCCATCCTCGTGTCACCCTTCTTGTGGTAGTACTGAAAGGAGAGTTCTTTCAAACCAAGTCAGTTGA 3972 0.4313 MREGLRSRSRPGKGSGGGGVVQKKRVGVKAEPFDLGGEGLGDSSLMVEKKGGVEELDLDLKLGGGSGNVEPAENGDDRVFLSGGGSIEEADVDRKGDEVLVEGGVECGGKEERDLDLNVSGGSGDVDSAENGNDRSCFSSGGSIEEADVGRKGNGVLVGGRVLRSRSKRGDDKISYKEDNDDVFSGSDRECGGFERVKVKEESEGTDELLGGGEDQRVMVTKGGHDKVKLKRKRGRPPKTESKEQKQEQLVDRLTRKRGHKRKRGRPPKVDHQNDLLTVVHNDKEKAGLVEHEEDLTIGDGANVNAIDDMCSERSSGKELEEQGFSPVNKNKVVKVLKNDKNGVTSPLRSDNVKGTDANKRQKSKEKQLVRDKIMERLSSAGWTVDFRPRNGRGYDDSVYVSPDGKTHWSITLAYNRLKMLYEAGDGEGKVYGPGFKFTPIPEEEINSLTRIVTKTRNDKSKPRKDKSGPLGRKGGKTVDGVNRKQKKEKPGSGAVKGKMKRKRSLLEEGKTSVVVRDHKRHKTQNKKRCGLLVRNAKEEVDSETDGYVPYSGKRTLLAWMIDSGTVLQNGKVHYVQPGRKFDGKITGDGIHCGCCNKILTISDFEAHAESKNFDPLKNIYIEEGISLLQCLQDSWNKQDESERKGFRLVDIAGEDPNDDTCGLCGDGGDLICCDGCPSTFHQSCLDIKKFPSGDWHCNYCCCKFCGLIGGSSNQSETHDDFTVSALLTCHLCEDKYHRSCFEANGAMTLDLRDTFCGSRCQELSERLEMLLGVKHEIEDGFSWSFIRRSDVCFDASQIKPQIVECNSKLAVAVSIMDECFMPYVDHRSGSNLIHSILYNCGSNFKRLNYSGFVTAILERGDEIIAAASIRIHGNQLAEMPFIGTRYMYRRQGMCRQLLNAIESALSSLNVELLVIPAISELRETWTSVFGFEPLESTSKQITKNMSLLVFPHVDMLQKKISKHKFDDENLITTEVSNFKKNHTTSMAANRDGVGSSGSDLINSTGIPLSVTCQVVCPAVQGNWAGDDKSTANACEYVTDSCCQSEDTSRCKNTSCTCMLLSHDEKPIDLNSVPDKERHCLSLCHVTEAPEGHQVGALLEVTENFPCEVKVSCEVLKNSVENPAPCGAESIPTDSPAVFTTRESKDSADTIQHGSHEISDSRELRSKACVQPDFIGSEVLGEPVDDCGSHSIPNGDLPANGEEDSSVVSTSNAEEVELCSAKTSELQTNINLRDCKSIPVSSGVGEKIADGVNERDRASSVAEANILTSNADTIPDDQPEMKESAELAEPDLQVDQTARSDAPSSCHPSCGSTERRVLSNQVS* 1324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1971 1323 MobiDBLite consensus disorder prediction 1186 1212 - -
Lja5g1971 1323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 651 765 IPR013083 -
Lja5g1971 1323 MobiDBLite consensus disorder prediction 124 140 - -
Lja5g1971 1323 SUPERFAMILY FYVE/PHD zinc finger 654 707 IPR011011 -
Lja5g1971 1323 MobiDBLite consensus disorder prediction 111 151 - -
Lja5g1971 1323 MobiDBLite consensus disorder prediction 452 511 - -
Lja5g1971 1323 MobiDBLite consensus disorder prediction 62 84 - -
Lja5g1971 1323 MobiDBLite consensus disorder prediction 237 255 - -
Lja5g1971 1323 MobiDBLite consensus disorder prediction 1297 1323 - -
Lja5g1971 1323 MobiDBLite consensus disorder prediction 167 211 - -
Lja5g1971 1323 MobiDBLite consensus disorder prediction 1 27 - -
Lja5g1971 1323 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 99 1201 - -
Lja5g1971 1323 SMART AT_hook_2 231 243 IPR017956 GO:0003677
Lja5g1971 1323 SMART AT_hook_2 261 273 IPR017956 GO:0003677
Lja5g1971 1323 MobiDBLite consensus disorder prediction 340 366 - -
Lja5g1971 1323 MobiDBLite consensus disorder prediction 455 511 - -
Lja5g1971 1323 ProSiteProfiles Zinc finger PHD-type profile. 659 704 IPR019787 -
Lja5g1971 1323 CDD NAT_SF 857 916 - -
Lja5g1971 1323 MobiDBLite consensus disorder prediction 167 272 - -
Lja5g1971 1323 PANTHER PHD FINGER PROTEIN 12 99 1201 IPR042163 GO:0003714|GO:0045892
Lja5g1971 1323 MobiDBLite consensus disorder prediction 1251 1323 - -
Lja5g1971 1323 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 801 961 IPR000182 GO:0016407
Lja5g1971 1323 Pfam Tify domain binding domain 584 634 IPR032308 -
Lja5g1971 1323 CDD PHD1_AIRE 662 701 - -
Lja5g1971 1323 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 849 921 IPR016181 -
Lja5g1971 1323 SMART PHD_3 661 702 IPR001965 -
Lja5g1971 1323 SMART PHD_3 703 762 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1971 Lja-Chr5 25312865 25320993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1971 226 968 PHD Transcription Factor Family AT5G36670 42.188 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1971 - - cam:101502634 1333.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1971 5 25312865 25320993 Lja5g1971 5 25312865 25320993 ECH