Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1970 ATGAAGTTCAACCCTAGTCTCGCGCAGCAGGCGAAAGAGCCGCAAGGCTCATTTCACAGCACCGTCGAGCGTCCGCACGCGCGCAAGTGGGTGATCCACATCGAGCGCATCACCCGTGAGAAGGTGAACGGCTCCACCGTCAACGTTGGGATCCACCCTTCCAAGGTGGTGGTCACCAAGCTCAGGCTCGACAAGGATCCCAAGGCCAAGGGACGCGCCGCTGCTGATAAGGAGAAGAGTACCAATGTACCACCACCACAAGGTGCACTACCACCACCACCACCACCTCCTCCACAAAGGCTACCTCCTGGTGCACCTATTGGAAATCCTCCTAGAGCCCCTCCACCTCCAATGCCAGGATCTGCACCGCCTCCGCCTCCTATGGCAGCAAACGGTCCTAGACCTGCTCCTCCTGGTGGAATGCCATCTATCCCACCCCCACCTCCTGTTAGTGGCGCATCAACAGGTTTCAACATGGGTGCTAGACCTCCATCAATGCCACCTCCGCAAGGGTACTAG 519 0.5857 MKFNPSLAQQAKEPQGSFHSTVERPHARKWVIHIERITREKVNGSTVNVGIHPSKVVVTKLRLDKDPKAKGRAAADKEKSTNVPPPQGALPPPPPPPPQRLPPGAPIGNPPRAPPPPMPGSAPPPPPMAANGPRPAPPGGMPSIPPPPPVSGASTGFNMGARPPSMPPPQGY* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1970 172 SUPERFAMILY Translation proteins SH3-like domain 21 78 IPR008991 -
Lja5g1970 172 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 26 82 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lja5g1970 172 MobiDBLite consensus disorder prediction 50 172 - -
Lja5g1970 172 MobiDBLite consensus disorder prediction 85 152 - -
Lja5g1970 172 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 32 68 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lja5g1970 172 MobiDBLite consensus disorder prediction 1 27 - -
Lja5g1970 172 MobiDBLite consensus disorder prediction 1 17 - -
Lja5g1970 172 Gene3D - 12 84 IPR014722 -
Lja5g1970 172 MobiDBLite consensus disorder prediction 58 77 - -
Lja5g1970 172 PANTHER 60S RIBOSOMAL PROTEIN L26-1-LIKE 26 82 - -
Lja5g1970 172 TIGRFAM rplX_A_E: ribosomal protein uL24 22 68 IPR005756 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1970 Lja-Chr5 25295748 25297599 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1970 26 81 Cytoplasmic Ribosomal Protein Gene Family AT3G49910 79.032 7.37e-29 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1970 K02898 - gmx:100819391 98.5969