Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1969 ATGAATGAAGACGACAATGACTACGCTGATGGACAAAACAACAATTCAGATTATCAATTTGAGGGTGAGGGCCTTGGTGACCACGGCGATTATGATCTTCATGAGACTGAGCTTGACTCCGGTGAAAGGTCGACAAGCGATCTCGATGGCGAAGAAAACAACTCTATTTGTGATGAGGACGAAGGTTCGCCTGACACAGCTAACCCAGCTGACAATACAGATGATGTAGCGGGGGTAAATTATAACGAAATGCATGGCAAAATACCCGTCAATCCTGTCAGAATTGATTCAAAGGATGACTTTCTCCTTCTGGATCTAATGACCATGAGACTGGAGGAAATCATGAGGTTTTCATTTTTGAGCTTGGAGCTGGCGTTCGAGTTCTACTGTTGGTTTGGAAGATTGTCCGGATTCTCTATTCGTAAAGACACCAAACGCTGGACCAAGAAAGGAGAGGTACGCCAACAAACTTTTGTGTGTCATAGGGAAGGCTTTCGCAAGAACAGTGATGTGAAGCGGACAGCTGAGGCTAGGAGTAATTATAGGTGTGGATGCAAAGCTAAATTACGGGTCCAAAGAAGCCATGCAGCAATGTTGGCTGCACACCGGCAAATGCACGGAGCGGATATCTTGAGTTTGAAAACTCATTTGAGTTCGGGTCTAACAACAGCCGACGTCTACAATTCACATGCTGCACAGGTTGGGGGGTATAACAACACGCAATACAGCTTGAAAGATCTTTAG 744 0.453 MNEDDNDYADGQNNNSDYQFEGEGLGDHGDYDLHETELDSGERSTSDLDGEENNSICDEDEGSPDTANPADNTDDVAGVNYNEMHGKIPVNPVRIDSKDDFLLLDLMTMRLEEIMRFSFLSLELAFEFYCWFGRLSGFSIRKDTKRWTKKGEVRQQTFVCHREGFRKNSDVKRTAEARSNYRCGCKAKLRVQRSHAAMLAAHRQMHGADILSLKTHLSSGLTTADVYNSHAAQVGGYNNTQYSLKDL* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1969 247 MobiDBLite consensus disorder prediction 23 49 - -
Lja5g1969 247 MobiDBLite consensus disorder prediction 1 78 - -
Lja5g1969 247 Pfam FAR1 DNA-binding domain 127 196 IPR004330 -
Lja5g1969 247 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 106 214 - -
Lja5g1969 247 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 106 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1969 Lja-Chr5 25283121 25283864 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja5g1969 FAR1 4.2e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1969 - - mtr:MTR_1g070355 124.79