Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1966 ATGCCAAGCACGAGAAATCTGAGGAACCTCAACCTCAACCGTTGTTTCTCAAATTCCACTACTACTCCTGAATCAAAATCATCCCCTCCTAATAAAAACCCCATTGCTACTATTGAAACCCCCTCACACCATTCTATTCATCACAACACTCCATGTCCATCACCTTCAATTATGATAAAAAACTTCAACTCTCTCTATGACCCTTCCTTAACCTTTGACAACTCTTTCTACTCCTCTTCCTTCTCCACCACCATCACCACCTCTACCGAACTCGAGGCTGAACCCGACTTAGCCGCCGCATTTGCCTCGAAACGCTTCTTCTTCTCCTCCCCCGGGCATTCCAACTCCCTCATGAAATACACAAACACCAAAAAAATCATCCAACATTCTTCACCATTGACAACCATCAAAGATGAGCCCAATGGTGAAGATGAGAAGACAAAAAAGAAGAAGAAGAAGGTTGTGTTCAACGGAAGCGTGGCGGTCCCGACATACTCTCCGGACCCTTACCTGGACTTCCGGCGGTCAATGCAAGAGATGGTGGAGGCGCGGCCAGAGTTGATGATGGATGTGAAGTCCAATTGGCACGTTTTGCACGAGCTCCTTATGTGCTACCTTGCGCTGAACCCCAAGAGCACACACAAATTCATTCTTGGTGCATTTTCTGATCTTCTTGTTAGTCTCTTGCCCTTCTAA 696 0.4641 MPSTRNLRNLNLNRCFSNSTTTPESKSSPPNKNPIATIETPSHHSIHHNTPCPSPSIMIKNFNSLYDPSLTFDNSFYSSSFSTTITTSTELEAEPDLAAAFASKRFFFSSPGHSNSLMKYTNTKKIIQHSSPLTTIKDEPNGEDEKTKKKKKKVVFNGSVAVPTYSPDPYLDFRRSMQEMVEARPELMMDVKSNWHVLHELLMCYLALNPKSTHKFILGAFSDLLVSLLPF* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1966 231 Pfam Transcriptional repressor, ovate 166 228 IPR006458 -
Lja5g1966 231 ProSiteProfiles OVATE domain profile. 162 227 IPR006458 -
Lja5g1966 231 PANTHER TRANSCRIPTION REPRESSOR OFP12 8 230 - -
Lja5g1966 231 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 160 229 IPR006458 -
Lja5g1966 231 MobiDBLite consensus disorder prediction 11 52 - -
Lja5g1966 231 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 8 230 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1966 Lja-Chr5 25136786 25137877 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lja5g1966 Ovate 9.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1966 - - aprc:113871147 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1113 1 11306081 11306839 Lja5g1966 5 25136786 25137877 PCT