Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1947 ATGGGTAACGTAGACTATGCGTACCCTTCCGCTGAGGAACGCGTGCACCACCGCGTGGAGGTTCCTCCTCCTCAGCCATTCTTCAAGTCTCTGAAGTACTCTCTGAAGGAGACATTCTTCCCTGATGACCCTCTAAGGAAGTTCAAGAACCAACCAACGTCAAAGAGATTATTGCTAGGAATTCAGTACTTCTTCCCCATCTTCGAATGGGGACCTCACTACACTTTTCAGTTCTTGAAATCTGACCTCATTGCAGGCATCACCATCGCTAGCTTGGCCATTCCACAAGGCATCAGTTATGCCAAGCTCGCCAACCTCCCTCCAATTCTTGGACTATATTCGAGTTTTATACCACCGTTGATTTATGCGATGATGGGTAGTTCAAGGGACTTGGCAGTGGGGACTGTGGCCGTTGGATCTCTTCTGTTGGGTTCCATGTTGGCGAATGTGGTGAATCCAAATGAGAAACCAAAGCTTTTCCTCCACCTAGCTTTCACAGCTACGTTCTTTGCTGGAGTCTTTCAGGCTGCATTGGGTCTATTTAGGTTAGGATTTATTGTGGATTTTCTGTCACATTCAACCATAGTTGGATTCATGGGAGGAGCAGCCACAGTGGTTTGTCTGCAGCAGCTAAAATCGATTCTAGGCCTTGAGCATTTCACTCACGGGGCTGATATAGTATCAGTGATGCGTTCTGTTTTTACCCAAACTCATGAGTGGAGGTGGGAAAGTGCTGTGTTGGGCTTTTGCTTCATTTTCTTCCTCCTTGTCACAAGATACTTTAGCAAAAAACAACCAAAGTTCTTTTGGGTGTCAGCAATGGCGCCATTGACGTCTGTTATCTTAGGAAGTGTGCTTGTGTATTTCACTCACGCTGAGAACCATGGCGTTCAAGTGATAGGAAATTTGAAGAAGGGGCTAAATCCACCATCTCTCACAGATTTGGTATTTGTGTCTCCTTATCTGAGCACTACTATCAAAACTGGCATTGTAGTTGGCATTATAGCACTTGCGGAAGGGATAGCAGTGGGAAAAAGCTTTGCGATGTTTAAAAATTATCAAGTTGATGGCAATAAAGAAATGATAGCTATTGGGACCATGAACATAGTTGGTTCATTCACCTCTTGCTATCTCACAACAGGGCCATTTTCACGTTCAGCAGTGAACTATAATGCTGGATGCAAAACTGCTACATCCAACATTGTAATGTCAATTGCAGTCATGTTGACATTGTTATTCCTGACACCCTTGTTCTATTACACTCCTCTGGTGGTGCTATCAGCTATAATCGTGTCTGCAATGCTTGGCCTCATTGATTATCAAGCTGCAATCCATCTATGGAAGATTGACAAATTTGATTTTGTTGTTTGTATGAGTGCATATATTGCTGTGGTCTTTGCTAGTGTTGAGATTGGCTTAGTTATAGCTGTTGCACTATCTGTAATTCGGCTACTTTTGTTTGTTGCAAGGCCAAAGACATTTGTTTTGGGCAACATTCCAAATTCTATGATATACAGAAATGTCGAGCAATATCCAAATGCAAAACATGTACCTGGAATCCTAATTTTAGAGATTGATGCACCAATTTACTTTGCCAATGCAAGCTACTTAAGAGAAAGGATCACAAGGTGGATTGATGAAGAGGAAGATAAAATTAAAGCTACAGGGGAGACAAGTTTGCAGTATGTTATAATGGATATGAGTGCTGTCGGGAACATCGATACAAGTGGAATTAGCATGCTTGAAGAGGTCAAGAAGATGGTAGACAGAAGAGGGCTACAACTTGTTTTGGTCAATCCTGGATGTGAGGTGATGAAGAAACTAAGCAAGTCCAACTTCCAAAAGGATATGGGGAAATGGATCTATTTGACAGTTGAAGAAGCTGTTGCAGCATGCAACTTTATTCTCCATGAGAGCAAGATGAATCCTAAGAAAAATGAATCTGAGAGTTGGGACAATGACCCAAGCTCAATAGGGTAA 1980 0.4247 MGNVDYAYPSAEERVHHRVEVPPPQPFFKSLKYSLKETFFPDDPLRKFKNQPTSKRLLLGIQYFFPIFEWGPHYTFQFLKSDLIAGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSRDLAVGTVAVGSLLLGSMLANVVNPNEKPKLFLHLAFTATFFAGVFQAALGLFRLGFIVDFLSHSTIVGFMGGAATVVCLQQLKSILGLEHFTHGADIVSVMRSVFTQTHEWRWESAVLGFCFIFFLLVTRYFSKKQPKFFWVSAMAPLTSVILGSVLVYFTHAENHGVQVIGNLKKGLNPPSLTDLVFVSPYLSTTIKTGIVVGIIALAEGIAVGKSFAMFKNYQVDGNKEMIAIGTMNIVGSFTSCYLTTGPFSRSAVNYNAGCKTATSNIVMSIAVMLTLLFLTPLFYYTPLVVLSAIIVSAMLGLIDYQAAIHLWKIDKFDFVVCMSAYIAVVFASVEIGLVIAVALSVIRLLLFVARPKTFVLGNIPNSMIYRNVEQYPNAKHVPGILILEIDAPIYFANASYLRERITRWIDEEEDKIKATGETSLQYVIMDMSAVGNIDTSGISMLEEVKKMVDRRGLQLVLVNPGCEVMKKLSKSNFQKDMGKWIYLTVEEAVAACNFILHESKMNPKKNESESWDNDPSSIG* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1947 659 PANTHER SLC26A/SULP TRANSPORTER-RELATED 2 651 - -
Lja5g1947 659 CDD STAS_SulP_like_sulfate_transporter 511 619 - -
Lja5g1947 659 ProSitePatterns SLC26A transporters signature. 108 129 IPR018045 GO:0008271|GO:0008272
Lja5g1947 659 Pfam STAS domain 511 628 IPR002645 -
Lja5g1947 659 Pfam Sulfate permease family 79 459 IPR011547 GO:0016021
Lja5g1947 659 Gene3D STAS domain 490 634 IPR036513 -
Lja5g1947 659 SUPERFAMILY SpoIIaa-like 512 632 IPR036513 -
Lja5g1947 659 TIGRFAM sulP: sulfate permease 66 627 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lja5g1947 659 ProSiteProfiles STAS domain profile. 510 632 IPR002645 -
Lja5g1947 659 PANTHER SULFATE TRANSPORTER 2 651 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1947 Lja-Chr5 24397904 24405657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1947 10 640 Inorganic Solute Cotransporters AT4G02700 68.088 0.0 899
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1947 K17471 - gmx:100810196 1117.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1947 5 24397904 24405657 Lja5g1947 5 24397904 24405657 ECH
Lja1g1098 1 10963819 10972754 Lja5g1947 5 24397904 24405657 PCT