Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1945 ATGGCTGAAGCTATTAAAAAGGCCAATTGTGTTCATTTTTCGGAAGAGAGGCTTTGTAAATGGCTTGTTCAACTGCTGATGGCACTTGATTACTTGCATGCAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATCTTTTTGACAAGAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCCAAAATGTTAACATGTGATGATCTTGCTTCCTCGGTTGTGGGAACACCAAGTTATATGTGCCCAGAGCTCCTGGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTATATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCTCTTGATATGCAAGCATTGATTAACAAAATAAACAAGTCTTTAGTGGCTCCACTACCAACAATGTATTCTGGTTCTTTTCGAGGCCTTGTGAAGAGTATGCTACGGAAAAATCCAGAGCTTAGGCCAAGTGCAGCAGAGTTACTCAATCATCCACATCTTCAACCTTATATTCTTAAAGTTCACATAAAACTAAATAGCCCCAGAAGAAGTACTTTTCCTTTCCAATGGGCTGACTCAAACTATGCAAGGAGAACACGGTTTGTAGAGCCAGCATCTTTTTCCACTCTTTCTGTCTCCGACAGAGGTAAACGATTGTCATTCAGTAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAACAAGGTTCTCTGTGTTCTACTCAAAGAGCACAAGGATTCTCTGCTTGTTCAAAAGACAAACATTATGAACAATCTGTTGGCTGTGTCAGTGAAGAATGCAATATGCCAAGAATGAGAACAGCTAAGGAATCTGCCACCCCCAGACGACACACAATACCATCGAAGATACCCCGAATTAGTTCCAAATATGATTCACTTCCAGCATCTTATACTCCAGCTGGTAAACTTACCCCACCAACTCGCAGAGCTTCCCTTCCACTGCCTACAACAACCATGGCCACTACTACCCCTTATAGAACCAGTGTCGGTTTTCTTCGTAGTGTGGATTCTCCTAATATTTCTGTTAATGCGCCACGAATCGACAAGATGGCTGAATTCCCTCTGGCCTCCGGTGAGAATATTCCTCTCTTCCCTGCTCGTAGAGCTTCATCAACATCAGCTCAGTGCTCTTCTGGTTCCCCAAGGAGCATTATTGACTGCACAATCACAAAGGACAAATGCACAATCCAGGTTGTGGACAAAGCCAGTGTCCCTACCAGTGGCAGTGATGGTGGTGCTGCAGTTTCACATAGCAACGAGTGCTCTGAACATGTAGCAACTGCTGTTTCAAGCCGTAGCCATTCCTCCTCTGCTGAGTCTTGCCAGCGCAGGTTTGACACCTCGTCTTACCAGCAGCGAGCGGAGGCATTGGAGGGGTTGCTTGAGTTCAGCGCACGGCTCCTGCAACAGCAGAGGTTTGAAGAGCTTGGCGTGTTGCTGAAGCCGTTCGGGCAAGAGAAGGTTTCTCCAAGGGAAACAGCTATTTGGTTGACTAAGAGCTTCAAAGAAACTGTGGTATGA 1554 0.4472 MAEAIKKANCVHFSEERLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTRDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTMYSGSFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKVHIKLNSPRRSTFPFQWADSNYARRTRFVEPASFSTLSVSDRGKRLSFSNDRALNPSISGTEQGSLCSTQRAQGFSACSKDKHYEQSVGCVSEECNMPRMRTAKESATPRRHTIPSKIPRISSKYDSLPASYTPAGKLTPPTRRASLPLPTTTMATTTPYRTSVGFLRSVDSPNISVNAPRIDKMAEFPLASGENIPLFPARRASSTSAQCSSGSPRSIIDCTITKDKCTIQVVDKASVPTSGSDGGAAVSHSNECSEHVATAVSSRSHSSSAESCQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGQEKVSPRETAIWLTKSFKETVV* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1945 517 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 506 - -
Lja5g1945 517 Pfam Protein kinase domain 11 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1945 517 ProSiteProfiles Protein kinase domain profile. 1 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1945 517 SUPERFAMILY Protein kinase-like (PK-like) 5 212 IPR011009 -
Lja5g1945 517 Gene3D Transferase(Phosphotransferase) domain 1 1 204 - -
Lja5g1945 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 37 49 IPR008271 GO:0004672|GO:0006468
Lja5g1945 517 SMART serkin_6 3 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1945 517 MobiDBLite consensus disorder prediction 307 331 - -
Lja5g1945 517 PANTHER SERINE/THREONINE-KINASE NEK4 1 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1945 Lja-Chr5 24328761 24332837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1945 13 201 MAP Kinase Kinase Kinase AT1G53570 33.010 1.31e-29 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lja5g1945 Pkinase 1.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1945 K08857 - gmx:100810347 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1945 5 24328761 24332837 Lja5g1945 5 24328761 24332837 ECH
Lja1g1097 1 10926311 10933340 Lja5g1945 5 24328761 24332837 PCT