Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1939 ATGGTAAGCAAGAATAACATTTCATCATTACATCACCTATTACTCGCGTTAGGGTTTCTGCTCTCCGCCACACTCCCCTTCGCTCTCGGAGAATCCTCCACATGCTTGACGGTGTACAAAACCGGCGGTGCTCCGGCGGTCTTCCAATCCCCAAAATGCCCCCGCTGGAAGCTCTCCGACTACAACGATTCTCCTCCCCAAACCACCGCGCGTTGCCAATCCGCCGTGCTCCAAGGCCGCAGAAAATCTCAAGAGGATCGCGCTCTCTGCCTCCTCGATATTCGCATTCCCTTCCCCGGTGCCGTTGGGATCAAGGAGGTTGCGGTTGGGATTGTGGCGGTTTTCGATGGTCATAACGGTGAAGAAGCTAGTGAGATGGCGTCGAAGCTTTTGGTCGAGTATTTCGTTCTGCATACTTATTTTCTTCTTGATGCTGCTTATTCTGTTATATCAAAGACGTCGTCGACGGAAACGATGCTTCACACGAGAGATCGTGATCATGTTAAACTATTGCATAGATGGAAAGAGATTCTAGGTTTGCAAGGGCATGAACTGCATTCCGAAAGGTTTCAGTATACACTTACTTCAAAATTTGATGACTCTTTTCACTTGGAAATTTTGAAGGAAGCCTTGTTGAGAGCAATCCATGATATTGATGCAAAATTTTCTGAGGAAGCCTCAAGAAATAATCTTCCTTCAGGATCTACAGCAACCATTGTACTGGTTGCAGATGATAAAATTTTGGTTGCCAATATTGGAGACTCCAAGGCCTTCTTGTGCTCTGAAAATTTTCAGTCTCCTAGAGAGGCTAAAGCCTCATTATTAAGGCTATATAGGCAGAAAGAGCATGATGGTTCTGTTTCTGTGTGGGATCGTGAAAAGTACAGATTGGCTTCTTCTCATGGACTCACTCATTTTGTAGTAAAGGAGTTGACCAGTGATCATCATCCAGACAGAGATGATGAAAGAATGCGGGTGGAAAAAGCTGGTGGTCAAGTTATATATTGGGCTGGTTTGCCTCGCGTAAATGGTCAGCTGGCTATTACACGGGCTATTGGTGACGTGTTCTTTAAAAGTTATGGTGTTATATCTGCACCTGAAGTGACTGATTGGCAGCCTCTGACTGCTAATGATAGTTATTTGGTGGTTGCATCTGATGGTGTATTTGAGAAGATGAGCGTGCAGGATGTCTGTGATTTGCTGTGGGAAGTACACCGTTTCAGTAACATGAGATCAGAGTGTGCCCCTTCATCTTCCTATTCATTGGCAGATTTTATAGTCAATACTGCCTTCAAAAAGGGCAGTATGGACAATATGGCAGCAGTTGTCATTCCTCTAGAATCTGCCAAATCTTCCACAAATTCACATAGAAGCTACACTGAAAAGAAGGATACAGGTTTCCCATTATTTGGTCTGCAGGAACCCTCTTCCAGAAACTCAGCTCATGGCATGTCATCTGAACTAATCCACTTGGAGCATCCTCATTTGGTAGATACCAAGTTTAAGCGAATATTGGTTGAAGGGAATCATGGTGATTTTGGATGTTTTTATTTATCTGAGAATCTTGATGAACTTGTGGACTCTAAGGGGCCTGCCAAAAAAACTGACAGGGAAGACCATTTGTATGAGCTACCTCCCCCTCCACCAGATGCCCTTCATGCTGCATTAGATGGTCCTGTAAACTTGTACAACGAGCAAAACTTTTGCTTTCACCTTGGTCCCACTGTCAGTGAAGCCAAAGACCAATGCATTAATCCTGAAGGCTTTGCCAGTTTTATTGGTATTCTCGGATCCATTCCTTTAAATGATACTGGTTCCAATAATGGGTCTTCTGATTATTCAATGCCTGATTTAAGGTATGTATTGAAGAAGAGTTATGGTCGTGGATCATATGGTGAAGTATGGTTGGCTTTTCATTGGAACTGTAATCAAGGTAATGATGGTGCAAAAATGAGCAAGGATGACAATAATATAAACAGCAGCTCAACTACTACTGATTGGCAGGACGGGCCTTCTAATTACACCCTCTACATTTTGAAACGTATAATGGTAGAGAGAGGCTCTGCTGTTTACTTAAGTGGACTGAGGGAGAAGTATTTTGGAGAAACTTTCTTAAATGCCTCTACATGCTTTGAAGATCTACTATCAGCTGGAAAATCAAACTGTGTCTTGGAAACATCACAATTTGGTTCAGATGATTCATTTCCAAACAAATTTCGACCGCAAAGATCCGCATATGAAGAAGGTTTGAACCATATTGCTAGATATGTGGAGTCATTTGAGTCTCGATCCAATGAGATATGGCTTGTATTCAATTATGAAGGAGTGTCATTGTCAAAACTTATATATACTGTGGAAGATGCATCTGATTCTTCTGAGAAAGAAAGACCTGAGCAAGTAAAACATGTTCAGATACTACGTCCATCAAAGTGGTGGCATTGGATGAAAACGACCGAAGAAGGGCAAGAGGAAATGCGCAATCTTATCTGGCAGCTGCTATTGGCGCTCAAGTCCTGTCATGATCGCAATATCACACACAGGGACATTAAACCTGAGAATATGGTGATATGCTTTGAAGATCAGGAGACAGGGAGATGCTTGAAAGAGATTCCAACAACAGTTAATAATTTTTCTACCAAAATGCGTATCATTGACTTTGGAAGTGGAATTGATGAATTCACATTAAAGCATTTATATGGTTCTACAGGGCCTTCTAGAGATGAACAAACTTATGACTATACAGCTCCTGAAGCTTTACTAAATGCCACATGGTTTCAAGGGTCAACAAGCTCAACGATGAAATATGACATGTGGAGTGTTGGTGTTGTGATGTTAGAGTTGGTCTTAGGTACACCAAATGTTTTCCAGATAAATGCTTTAACACGTGCTCTTTTGGACCGCCATCTTGAGGGCTGGAATGAGGATGTGAAGAAACTGGCATACAAACTTAGATCATTCATGGAATTGTGCATCTTAGTCCCTGGAATTTCTGGTAGTGCCTCAAAAAAGTATCACACAACGAATCAAGTTGGAGTTTCACCTGCATCCTGGAAATGCTCTGAAGAATTCTTTTCTCGTCAAATTAAGAATAGAGATCCTCTTAAAATAGGTTTTTCAAATGTCTGGGCTCTACGCTTAGTGCGCCATCTATTACTCTGGGACCCAGAGGATCGGCTTAGTGTTGATGAGGCACTGCAGCATCCCTATTTCCAGCCTCCCCCAAGAGGATTATGA 3234 0.4239 MVSKNNISSLHHLLLALGFLLSATLPFALGESSTCLTVYKTGGAPAVFQSPKCPRWKLSDYNDSPPQTTARCQSAVLQGRRKSQEDRALCLLDIRIPFPGAVGIKEVAVGIVAVFDGHNGEEASEMASKLLVEYFVLHTYFLLDAAYSVISKTSSTETMLHTRDRDHVKLLHRWKEILGLQGHELHSERFQYTLTSKFDDSFHLEILKEALLRAIHDIDAKFSEEASRNNLPSGSTATIVLVADDKILVANIGDSKAFLCSENFQSPREAKASLLRLYRQKEHDGSVSVWDREKYRLASSHGLTHFVVKELTSDHHPDRDDERMRVEKAGGQVIYWAGLPRVNGQLAITRAIGDVFFKSYGVISAPEVTDWQPLTANDSYLVVASDGVFEKMSVQDVCDLLWEVHRFSNMRSECAPSSSYSLADFIVNTAFKKGSMDNMAAVVIPLESAKSSTNSHRSYTEKKDTGFPLFGLQEPSSRNSAHGMSSELIHLEHPHLVDTKFKRILVEGNHGDFGCFYLSENLDELVDSKGPAKKTDREDHLYELPPPPPDALHAALDGPVNLYNEQNFCFHLGPTVSEAKDQCINPEGFASFIGILGSIPLNDTGSNNGSSDYSMPDLRYVLKKSYGRGSYGEVWLAFHWNCNQGNDGAKMSKDDNNINSSSTTTDWQDGPSNYTLYILKRIMVERGSAVYLSGLREKYFGETFLNASTCFEDLLSAGKSNCVLETSQFGSDDSFPNKFRPQRSAYEEGLNHIARYVESFESRSNEIWLVFNYEGVSLSKLIYTVEDASDSSEKERPEQVKHVQILRPSKWWHWMKTTEEGQEEMRNLIWQLLLALKSCHDRNITHRDIKPENMVICFEDQETGRCLKEIPTTVNNFSTKMRIIDFGSGIDEFTLKHLYGSTGPSRDEQTYDYTAPEALLNATWFQGSTSSTMKYDMWSVGVVMLELVLGTPNVFQINALTRALLDRHLEGWNEDVKKLAYKLRSFMELCILVPGISGSASKKYHTTNQVGVSPASWKCSEEFFSRQIKNRDPLKIGFSNVWALRLVRHLLLWDPEDRLSVDEALQHPYFQPPPRGL* 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1939 1077 Gene3D - 67 455 IPR036457 -
Lja5g1939 1077 Gene3D Transferase(Phosphotransferase) domain 1 809 1071 - -
Lja5g1939 1077 PANTHER ALPHABET, ISOFORM E-RELATED 24 607 - -
Lja5g1939 1077 SUPERFAMILY Protein kinase-like (PK-like) 619 1072 IPR011009 -
Lja5g1939 1077 ProSiteProfiles Protein kinase domain profile. 620 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1939 1077 Pfam Protein kinase domain 816 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1939 1077 SMART PP2C_4 63 444 IPR001932 -
Lja5g1939 1077 PANTHER PROTEIN PHOSPHATASE 2C 50-RELATED 24 607 - -
Lja5g1939 1077 SMART serkin_6 620 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1939 1077 ProSitePatterns Serine/Threonine protein kinases active-site signature. 844 856 IPR008271 GO:0004672|GO:0006468
Lja5g1939 1077 SUPERFAMILY PP2C-like 68 447 IPR036457 -
Lja5g1939 1077 ProSiteProfiles PPM-type phosphatase domain profile. 71 446 IPR001932 -
Lja5g1939 1077 CDD PP2Cc 71 446 IPR001932 -
Lja5g1939 1077 Pfam Protein phosphatase 2C 162 439 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1939 Lja-Chr5 24220748 24248480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1939 684 1074 PP2C-type Phosphatase Gene Family AT3G63340 66.244 2.41e-180 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSKL Lja5g1939 Pkinase 6.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1939 - - lja:Lj5g3v1003920.1 2073.51