Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1938 ATGAATTATATGTATTCAGTGAAAGAAGAGTACATGGCAGTACCATCATCATCGTTTCAATCTGGAGATAAATTCCCATCAACGATTCAACCTCCCCAGCCAATGGAAGGACTTCATGAGATAGGACCCCCGCCATTCCTCACCAAAACGTTTGATGTGGTGGACGATCCAGCTACCAACCATGTAGTTTCGTGGAGCAGGGGCGGCACTAGCTTTGTGGTTTGGGATCCACATGCTTTCTCGATAGGTCTTCTTCCTAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTGAGGCAATTAAACACATATGGATTTAGAAAAATTGATCCAGATAAATGGGAGTTTGCAAATGAAGGATTCCTAAGAGGCCAGAGGCACCTGTTGAGGAACTTAAGGAGAAGGAAAGCACCTTCCCAACAAGCACAAGGTCACAGTGTTGACGTTAGCCGTTTTGGACTTGATGAAGAAGTTGATCGTTTGAGGCGCCAAAAGCGGGAATTGATGATGGAACTCGTGAATCTTAGAGAGCAGCAACACAATACCAGAGTTCACCTTCAGGAGATGGAGCAAAGGCTAAAAGGAATACAAATCAAGCAGCAGCAAATGCTATCATTCTTAGCCAGAGCTATGAAAAATCCAAACTTCATACATCAACTACTCCAACAAAAAGAGAAGAGAAAGGTGCTTGAAGAAGCCATGACCAGAAAGAGAAGGCTAATTGAGCAAGGAACTAGTTGTATTGGAGAATCTAGCATTGCAGGTGAAGGGAGGGGAAGTGTTAAAGTTGAGCCCTTAGAACTTAGTGATTATGAATTTGGGGTGTCAGAGTTGGAAATGCTAGCTATGGAAATGCAGGGTTTTGGAACTGGGAGGACTGTAGATCAAGAAGAACGACCGGAGGGACAAGAATCACAAGACGGGGTGGACAGTATAATTGATGAAGAATTCTGGGAAGCACTATTGTTTAGTGAGAAATTTCCGGGTCAATTAGACTTCGCAATTGCATCTGTTGAAGATAAAGACTAA 1029 0.4295 MNYMYSVKEEYMAVPSSSFQSGDKFPSTIQPPQPMEGLHEIGPPPFLTKTFDVVDDPATNHVVSWSRGGTSFVVWDPHAFSIGLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLRGQRHLLRNLRRRKAPSQQAQGHSVDVSRFGLDEEVDRLRRQKRELMMELVNLREQQHNTRVHLQEMEQRLKGIQIKQQQMLSFLARAMKNPNFIHQLLQQKEKRKVLEEAMTRKRRLIEQGTSCIGESSIAGEGRGSVKVEPLELSDYEFGVSELEMLAMEMQGFGTGRTVDQEERPEGQESQDGVDSIIDEEFWEALLFSEKFPGQLDFAIASVEDKD* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1938 342 PRINTS Heat shock factor (HSF) domain signature 46 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja5g1938 342 PRINTS Heat shock factor (HSF) domain signature 97 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja5g1938 342 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja5g1938 342 Gene3D - 39 136 IPR036388 -
Lja5g1938 342 SUPERFAMILY "Winged helix" DNA-binding domain 42 135 IPR036390 -
Lja5g1938 342 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 329 IPR027725 -
Lja5g1938 342 Pfam HSF-type DNA-binding 46 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja5g1938 342 SMART hsfneu3 42 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja5g1938 342 ProSitePatterns HSF-type DNA-binding domain signature. 85 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja5g1938 342 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 14 329 - -
Lja5g1938 342 Coils Coil 151 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1938 Lja-Chr5 24216687 24219564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1938 26 322 HSF AT3G22830 50.751 3.32e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja5g1938 HSF_DNA-bind 1.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1938 K09419 - gmx:100794264 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1092 1 10897983 10901716 Lja5g1938 5 24216687 24219564 PCT