Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1932 ATGTTCCCTGCAGTTATGTCCAATTCTAATTCTTTGTCTGAAGAAGCCCCTGTCTCTTCTGCTGGTACAAGAACTCAGGACTTTAGTAGATTAAATCACCTAGTCTCAACCATTAATTCCCCACAGCAGCCTCATAAGATCAAGAAAAAGAGAAGCCTCCCTGGAAACCCAGACCCAGATGCTGAAGTGATAGCTTTATCCCCCAAGACCCTTCTAGCTACCAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGACCAGAACCTTCAGCTTCATAGGAGGGGACATAACCTCCCATGGAAGTTGAAGCAAAGGAACAGCAAAGATATCAAGAAGAAAGCCTATGTTTGTCCAGAGCCTTCATGTGTTCACCACAACCCAGCAAGGGCTCTTGGGGATCTTACAGGAATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGACAAGTGCTCAAAGATCTATGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAGTATAGATGTGATTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCACAGAGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGAATGTCAGCAAACCAATCAACCACCACCACAACCACCAACCCATTAGTCCAATCTCTCTTCCTTTTCCCAACCCAACAACAACAAAATATCCAAAACCACATGAATCCCTGGTTCCCATCTCAACAAGAAAACCCTAACCCTAGCAACCTTGCTCCCCTTACAACCACCCTCCACCACAACATCAAGCCTGATGCTCAAAACTTCCACCTCTCTTCTTCTTCTCCCACATTCCTTCACCACCCCAAGACCATCATAGCCTCCCCCCCCTTCCGTGACCTCCACGTTCCAGCCACGTCGCCGTACCTCTCAGCCACCGCCCTGCTCCAGAAGGCTGCGACCTTTGGCGCTGCCGCCATCACAGGCCAACATGCTCCTCCTCATCAGCTCAGCATGAGTGAGTTCGGATCAGTGACGACTCAGCTCGACTCGGTGGTGCCTGACCACTTCATCAACGTGAGAGGGATCAAGAACGGCGACGACCGCCACACCAGGGACTTTCTAGGCCTGACCGGGGATGGTAACGGAGGCGCGGTTGATGTTAGCGTTGGCGTGAAGGATATGCTAACATTCACGGGGGTCGATTACCAACAGCCACATTATAACGAGCACAACCACAACTCGTTGTTCAAGTCGCAACAACAAGGTTTTGGATTAATTAGGACAACTACTGCCCCTGAGTCTTGGGGGAATTGTTAG 1326 0.4857 MFPAVMSNSNSLSEEAPVSSAGTRTQDFSRLNHLVSTINSPQQPHKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKDIKKKAYVCPEPSCVHHNPARALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARMSANQSTTTTTTNPLVQSLFLFPTQQQQNIQNHMNPWFPSQQENPNPSNLAPLTTTLHHNIKPDAQNFHLSSSSPTFLHHPKTIIASPPFRDLHVPATSPYLSATALLQKAATFGAAAITGQHAPPHQLSMSEFGSVTTQLDSVVPDHFINVRGIKNGDDRHTRDFLGLTGDGNGGAVDVSVGVKDMLTFTGVDYQQPHYNEHNHNSLFKSQQQGFGLIRTTTAPESWGNC* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1932 441 MobiDBLite consensus disorder prediction 1 24 - -
Lja5g1932 441 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Lja5g1932 441 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Lja5g1932 441 Gene3D Classic Zinc Finger 131 211 - -
Lja5g1932 441 MobiDBLite consensus disorder prediction 36 57 - -
Lja5g1932 441 Gene3D Classic Zinc Finger 56 125 - -
Lja5g1932 441 SUPERFAMILY beta-beta-alpha zinc fingers 76 173 IPR036236 -
Lja5g1932 441 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 418 - -
Lja5g1932 441 SMART c2h2final6 153 173 IPR013087 -
Lja5g1932 441 SMART c2h2final6 77 99 IPR013087 -
Lja5g1932 441 SMART c2h2final6 118 148 IPR013087 -
Lja5g1932 441 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1932 Lja-Chr5 23949848 23953802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1932 15 428 IDZ Gene Family AT4G02670 51.376 4.27e-127 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g1932 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1932 K25870 - gmx:100780056 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1932 5 23949848 23953802 Lja5g1932 5 23949848 23953802 ECH
Lja5g1932 5 23949848 23953802 Lja1g1091 1 10888336 10891988 PCT