Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1917 ATGGCGAATCACCCTTCCGACGCCCCCGCCGCCGACGACTTCCTCGAGCAAATCCTCGGCCTCCCAAACTTCGCTTCCGCCGACGGAACCGACGCTTCTTCCTTGCACGCTCCGATGATGCTGCAGCTCAACTCCGGCGACCTCGCCGCCGGCGGAGCCGGCTTTCACTCGCCGGTTTATCAGCTGGGACTGAGCTTGGACCAAGGGAAAGGAGGAGGGTTCTTGAAGCCTGATGATGCTTCCGGGAGTGGTAATCGTTTCCGTGAAGATGTTGTTGTTGGTGCCAGACATAAGAATGCTTTTCATGGGCAACCTATGCCCACTACTGTTCCTTCTGCTCCACATCCACCACCTATGCGTCCTAGAGTGCGGGCTAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAAAGGCTGCGCCGCGAAAGAATAGCCGAAAGAATCAGAGCTCTGCAAGAACTGGTTCCTAGTGTTAACAAGACAGATAGAGCTGTCATGCTGGATGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTCTGAGCATGAGTAGATTAGGTGGAGCTGGTGCAGTGGCGCCACTGGTAACTGACATCCCATTATCATCAGTTGAGGAAGAAGGTGGCGAGGGTGGAAGGAACCAACCAGCCTGGGAGAAGTGGTCAAATGACGGCACAGAAAAACAGGTAGCTAAGCTCATGGAAGAAAATATTGGGGCTGCCATGCAGTTTCTCCAATCAAAGGCACTCTGCATCATGCCGATCTCACTAGCATCAGCAATATACCAGTCACAACCATCAGAAAACTCTAGTATAGTTAAGCCTGAAACTTCTCCTCCTTCATAG 858 0.5186 MANHPSDAPAADDFLEQILGLPNFASADGTDASSLHAPMMLQLNSGDLAAGGAGFHSPVYQLGLSLDQGKGGGFLKPDDASGSGNRFREDVVVGARHKNAFHGQPMPTTVPSAPHPPPMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAVMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGGRNQPAWEKWSNDGTEKQVAKLMEENIGAAMQFLQSKALCIMPISLASAIYQSQPSENSSIVKPETSPPS* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1917 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 188 IPR036638 GO:0046983
Lja5g1917 285 Pfam Helix-loop-helix DNA-binding domain 134 178 IPR011598 GO:0046983
Lja5g1917 285 MobiDBLite consensus disorder prediction 208 227 - -
Lja5g1917 285 Gene3D - 124 186 IPR036638 GO:0046983
Lja5g1917 285 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 274 - -
Lja5g1917 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Lja5g1917 285 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 274 - -
Lja5g1917 285 SMART finulus 135 184 IPR011598 GO:0046983
Lja5g1917 285 MobiDBLite consensus disorder prediction 101 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1917 Lja-Chr5 23638794 23643019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1917 55 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 77.872 6.40e-116 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g1917 HLH 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1917 - - gmx:100797789 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1917 5 23638794 23643019 Lja5g1558 5 16469003 16473941 ECH
Lja5g1917 5 23638794 23643019 Lja5g1917 5 23638794 23643019 ECH