Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1915 ATGGAGAATTATGAAACAGAGATGAATCTCAAGGCAACAGAGTTGAGGTTGGGTTTGCCAGGAAGGGATGAGCTGGAGAACGCTGTTGTTAGATGCAACAAGAGATCTTCACCAGAAGCCAGTGAGGGAGACTCCAATGTTAATTCTAATGGCTCTTCAGATATCACAAGTGATGATAAAGATAGTGCCCCACCTGCCAAGGCACAAGTAGTTGGATGGCCACCAGTTAGATCTTTTAGGAAGAATAGTATGCAACAGAAGAAGGGTGAAGGTGCTGGGATGTATGTGAAAGTGAGTATGGCGGGTGCACCTTACTTGAGGAAGATAGATCTCAAGGTTTACAAGAGCTACCCAGAACTTCTCAAAGCCTTGGAAAACATGTTCAAGTGCACATTTGGTGAATATTCTGAAAGAGAAGGCTACAATGGATCTGAATATGTCCCAACTTATGAAGATAAAGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGGACATGTTTATGTCTTCCTGCAAGAGGCTGAGAATTATGAAAGGATCAGAAGCAAAGGGGTTGGGTTATTTTTAG 570 0.4316 MENYETEMNLKATELRLGLPGRDELENAVVRCNKRSSPEASEGDSNVNSNGSSDITSDDKDSAPPAKAQVVGWPPVRSFRKNSMQQKKGEGAGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMFKCTFGEYSEREGYNGSEYVPTYEDKDGDWMLVGDVPWDMFMSSCKRLRIMKGSEAKGLGYF* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1915 189 SUPERFAMILY CAD & PB1 domains 89 179 - -
Lja5g1915 189 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 187 IPR003311 GO:0005634|GO:0006355
Lja5g1915 189 Gene3D - 87 188 - -
Lja5g1915 189 ProSiteProfiles PB1 domain profile. 93 180 IPR000270 GO:0005515
Lja5g1915 189 MobiDBLite consensus disorder prediction 28 72 - -
Lja5g1915 189 MobiDBLite consensus disorder prediction 39 59 - -
Lja5g1915 189 PANTHER AUXIN-INDUCED PROTEIN 3 187 - -
Lja5g1915 189 Pfam AUX/IAA family 34 187 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1915 Lja-Chr5 23627987 23629601 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1915 85 186 B3 DNA Binding Superfamily AT2G46530 36.275 1.67e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja5g1915 AUX_IAA 3.9e-57 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1915 K14484 - gmx:100780752 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1915 5 23627987 23629601 Lja1g0192 1 1649273 1652168 ECH
Lja5g1915 5 23627987 23629601 Lja5g1915 5 23627987 23629601 ECH