Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1914 ATGGAGAAGATGATGGTGTTTGAGGAAACTGAGCTGAGGCTTGGCCTTGGGTTGCCTGGAAATGGAGGCACAGCAGCAGGCACTGGTACTGAAGGTGCTGCTGCAGAAGGAGCTGTGATGAGAAAGAGAGGATTCTCTGAAACTGAGTCGACTGAGACTGAAGAAACAGCAACCACTACTGTGGATCTGATGCTTAACCTTTCCCCTAAAGAAGCTTCTTCTGCTTCGGCTGCTGCTGGTGGGGCAGATCCACGTGATAAGCTTAAGACTTCTTCGCCTAAGGAGAACACCCTGCTGGTCTCTGATTCTGCCAAGCCTCCTCCTGCTAAGGCGCAAGTGGTGGGTTGGCCACCAGTTCGGTCGTTCCGGAAGAACATGTTTGCGGCCCAAAAGAGCAGCGGAGATCAAGAGAGCGAGAAGAACAGCAGCCCTAATGCAAGCTTTGTGAAAGTGAGCATGGATGGAGCACCTTACCTCCGCAAAGTGGACTTGAGCATGTACAAGACTTACAAAGATCTCTCTGATGCCTTAGGCAAAATGTTTAGCTCCTTCACCATTGGAAATTGCGAGTCCCAAGGCATTAAGGATTTCATGAATGAGAGTAAGTTGATGGATCTTTTGAACTCCGACTATGTCCCAACCTATGAAGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTACCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTCGCACCAAGAGCCATGGAGAAATGCAAGAACAGGAGCTAG 792 0.4886 MEKMMVFEETELRLGLGLPGNGGTAAGTGTEGAAAEGAVMRKRGFSETESTETEETATTTVDLMLNLSPKEASSASAAAGGADPRDKLKTSSPKENTLLVSDSAKPPPAKAQVVGWPPVRSFRKNMFAAQKSSGDQESEKNSSPNASFVKVSMDGAPYLRKVDLSMYKTYKDLSDALGKMFSSFTIGNCESQGIKDFMNESKLMDLLNSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKCKNRS* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1914 263 Pfam AUX/IAA family 9 254 IPR033389 -
Lja5g1914 263 MobiDBLite consensus disorder prediction 71 92 - -
Lja5g1914 263 ProSiteProfiles PB1 domain profile. 146 245 IPR000270 GO:0005515
Lja5g1914 263 SUPERFAMILY CAD & PB1 domains 138 244 - -
Lja5g1914 263 Gene3D - 140 257 - -
Lja5g1914 263 PANTHER AUXIN-INDUCED PROTEIN AUX28 4 256 - -
Lja5g1914 263 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 256 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1914 Lja-Chr5 23570023 23573349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1914 160 248 B3 DNA Binding Superfamily AT1G19220 33.708 2.82e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja5g1914 AUX_IAA 2.1e-83 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1914 5 23570023 23573349 Lja5g1559 5 16516272 16519191 ECH
Lja5g1914 5 23570023 23573349 Lja5g1914 5 23570023 23573349 ECH
Lja1g1074 1 10709040 10710626 Lja5g1914 5 23570023 23573349 PCT