Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1902 ATGGAAGAGGTTGAGCAAGCTAATAGAGCAGCTGTTGAAAGCTGCCATAGGGTTCTTAATTTGTTGTCTCAGCCAAGGGATCAGGTTCAGCATAGGAATCTAATGGTGGAAACTGGGGAAGCTGTGGTGAGGTTCAAGAAAGTTGTTTCCTTGCTTCACAATGGTTTGGGTCATGCAAGATTCAGGAAGTGTAAAACAACACCTCAAAACCCCTTTTCCCAAAGAATCTTCTTGGACAACCCAAATTGCAAAAGCAACAACCATCACTCAAAAAGTCTGCAGTTTCCCCAAACTAGTTTTCCTGACAATTCAGTTCAGGAGTTGGGCTCAAGTACCATTAGGAATTCATTGTCTCTGGTAAACCCAACTTTGGAGTTGAGCTCCAGTGGGAAAACTCCCCTTCACCTTACTACCCAACAAGCCTCATCACAGCACTATCACTTTATTCAGCAGCAGCAGCAGCAGCAAAGGTTGATGCTGCAGCAGCAACAAATGAAGCATCAAGCTGAAATGATGTTCAGAAGGAACAGTAGTGGCATAAACCTGAATTTTGACAGCACTAGCTGCACACCTACAATGTCATCTACTAGGTCTTTCATTTCCTCCTTGAGCATAGATGGAAGTGTGGCTAACTTAGATGGAAGTTCCTTCCATTTGATAGCAGCTCCACACTCTTCTGATCAGAATTCACAGCAGCATAAAAGAAAATGTTCTGCCAGAGGTGATGATAGCAGCTTGAAATGTGGGAGCAGTTCTAGATGCCATTGCTCAAAGAAGAGGAAACATAGAGTGAAGAGATCAATTAAGGTGCCTGCTATCAGCAACAAGCTTGCAAATATCCCTCCTGATGATTATTCATGGAGGAAGTATGGGCAGAAGCCAATCAAGGGCTCTCCTCACCCTAGGGGATATTACAAGTGCAGCAGCATGAGAGGGTGTCCTGCTAGGAAGCATGTTGAGAGGTGCTTGGAAGAGCCTACTATGCTACTTGTTACCTATGAAGGTGAGCATAATCACCCTAAGATACCAACACAACCTGCAAATGCATAA 1050 0.441 MEEVEQANRAAVESCHRVLNLLSQPRDQVQHRNLMVETGEAVVRFKKVVSLLHNGLGHARFRKCKTTPQNPFSQRIFLDNPNCKSNNHHSKSLQFPQTSFPDNSVQELGSSTIRNSLSLVNPTLELSSSGKTPLHLTTQQASSQHYHFIQQQQQQQRLMLQQQQMKHQAEMMFRRNSSGINLNFDSTSCTPTMSSTRSFISSLSIDGSVANLDGSSFHLIAAPHSSDQNSQQHKRKCSARGDDSSLKCGSSSRCHCSKKRKHRVKRSIKVPAISNKLANIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLLVTYEGEHNHPKIPTQPANA* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1902 349 Pfam Plant zinc cluster domain 234 278 IPR018872 -
Lja5g1902 349 Pfam WRKY DNA -binding domain 283 340 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g1902 349 SMART WRKY_cls 281 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g1902 349 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 348 IPR044810 GO:0003700
Lja5g1902 349 ProSiteProfiles WRKY domain profile. 276 342 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g1902 349 SUPERFAMILY WRKY DNA-binding domain 279 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja5g1902 349 MobiDBLite consensus disorder prediction 223 243 - -
Lja5g1902 349 Gene3D WRKY domain 266 343 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja5g1902 349 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 2 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1902 Lja-Chr5 23302918 23305870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1902 1 345 WRKY Transcription Factor Family AT2G30590 55.526 3.51e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja5g1902 WRKY 7.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1902 - - gmx:100170681 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1902 5 23302918 23305870 Lja5g1902 5 23302918 23305870 ECH