Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1899 ATGGTGACAGCACGAACCACTCCTTCTCATCCTTCATACGAAGAGATGATTAAGGATGCGATTGTGACGTTGAAGGAGAGAACAGGTTCGAGCCAGTACGCGATCACGAAGTTCATCGAAGAGAAGCACAAGAAGGTTCCGGCGAATTTCAGGAAGCTATTGCTCTACCATTTGAAGAAGCTTGTTGCATCTGGAAAGCTTGTCAAGGTGAAAGCCTCCTTCAAGCTTCCGCCGAAGGCGGCGGCGAAGTCTGCAGAAGTGTCTAAGCCCAAAACTGTGGCGGCTAAGGTGAAGAAAGTTGTGGCGGTTACGCCCAAGCCTAAGGCTGCTGCTTCGAAGGCAAAAGCTGCTGCTCCGGCGAAGCCCAAGCCCAAAGTGTCTGCGAAGCCCAAGGCTGGTGTAAAACCGAAGCCCAAGAAGAGTCCGGCGAAGGCTACAAGGACGTCGACAAGGACATCGCCGGGGAAGGCTGTGAAGAAAGCTCCGGTGAAGAGCGTGAAGTCTCCGACGAAGAAGAAGGCTGCGGTGAAAAGAGGGGGAAGGAAATGA 549 0.5301 MVTARTTPSHPSYEEMIKDAIVTLKERTGSSQYAITKFIEEKHKKVPANFRKLLLYHLKKLVASGKLVKVKASFKLPPKAAAKSAEVSKPKTVAAKVKKVVAVTPKPKAAASKAKAAAPAKPKPKVSAKPKAGVKPKPKKSPAKATRTSTRTSPGKAVKKAPVKSVKSPTKKKAAVKRGGRK* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1899 182 PANTHER HISTONE H1-LIKE 4 176 - -
Lja5g1899 182 MobiDBLite consensus disorder prediction 128 144 - -
Lja5g1899 182 Pfam linker histone H1 and H5 family 10 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja5g1899 182 PANTHER HISTONE H1 4 176 - -
Lja5g1899 182 MobiDBLite consensus disorder prediction 104 182 - -
Lja5g1899 182 MobiDBLite consensus disorder prediction 165 182 - -
Lja5g1899 182 PRINTS Histone H5 signature 100 114 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja5g1899 182 PRINTS Histone H5 signature 23 40 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja5g1899 182 PRINTS Histone H5 signature 131 148 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja5g1899 182 PRINTS Histone H5 signature 153 172 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja5g1899 182 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 9 78 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja5g1899 182 Gene3D - 4 89 IPR036388 -
Lja5g1899 182 SMART h15plus2 7 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja5g1899 182 CDD H15 7 83 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja5g1899 182 SUPERFAMILY "Winged helix" DNA-binding domain 7 90 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1899 Lja-Chr5 23218017 23218698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1899 1 99 Single Myb Histone (SMH) Gene Family AT1G72740 33.333 1.81e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1899 K11275 - pvy:116120946 130.954