Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1898 ATGACAAACATATTTGAAAAGCAGCCATCTCCTGAAGCTTCAAACTATGCATCAAGCAGGGGTGTTTCTGGGGATGATAAGGAAATTGGGTATAGAGGTGGAACATCTAAGCGATATCTTTTGGCCAACAATTCATCTCTTCATTTCTCAACCATCAAATTTGACATGAATTGCGCCCGAATGGTGATGGCAGAGCTGGTAGGTACTTTTATTCTGATGTTCTGTGTATCTGGAATCATTGCAAGCACACAATTGCAAAATGGTGCAGTGGGCCTTCTGGAGTATGCAGCTACAGCAGGATTAACTGTGGTTGTGATAATTTTCTCAATAGGACCAATATCTTGTGCCCATGTTAACCCTGCTGTTACAATAGCCTTTGCAACAATTGGTCAATTTCCATGGTTCAAGGTTCCAATTTACATAATATCACAGTTAGTAGGTTCTGTGTTGGGAACATATATAGGTAGCCTTGTTTATGGCATAAAACCAGATGTGATGATGACCAAGCCAATGCAAGGGTGCAACTCTGCCTTCTGGGTGGAGCTTATTGCAACTTTCATCATCATGTTCCTGGTTGTAGCTTTGACATCTGAACCTCAATCTGTGGGGCATTTATCTGGCATTGTTGCTGGAATTGCAATTGGACTAGCTGTACTAATCACAGGCCCTGTCTCTGGTGGATCAATGAATCCTGCAAGATCATTAGGTCCTGCAATTATCTCATGGAAATTTAAGGACATATGGATATACATCTTAGCCCCCACTGTTGGAGCTGTGGCAGGAGCTCTAATGTTTCGTTTTCTACGTCTTCGAGACCAACATTGTAGCACTTTGTCCTCCCCAAACATATGTGATGTTGGTCGTTCTATACCCTTTTGTGCAAATTACAATGGCAGCAAACCCAGCTTCACAAAGATTATATTGGTCTCCTCCATTGGGTTGATATTTGCAGCAGCAATGCATTATCGCCTCAAAATAATGAGAGATCGAAAGATCATTCCACGTTTGAGATTCTCAAAGGCTAGCCAAGCCCCAAAGCTTGAGAGATTCTCTCATTACGTAGCTAGGCAAATGGGGTTCAAAGATAGGAGGAATTGTCCTCATCTATGCAAATTGGCTTCTGAGTATATAAGGAAATCTGAGGGATGTGAAGATGACATCTATGCCTTCTTCGAGAATGAACCAGATGCGGATTCACTTTTTGTGAAGCTTGTGGAGGAGTTTGAGAGATGCATTCTCAGTTACTTTGCATACCATTGGAGCCGCGGTGATGCACTCATAAGTCAGGTGTTGAGCTCTGACAATGAGCCAAAGAAGAAGCTCAAGCACATAGTTATGGCAGCAACTAGGGATCAAAGGGTGGAGAGGGTAACCAAGAATCTGAAGGTGGCTAGAGTTTTTAACACATTAGTAGAAGAGATGAGAGCAATGGGGTTTGTATCAAATGATGACAATAGATGCACAGAGGTGATGGCCCCTGTAGCTCACAGTGACAGGAGCCCAGTGCTCCTTTTCATGGGAGGTGGTATGGGAGCTGGAAAGAGCACTGTGCTTAAAGACATTCTCAAGGAACCATTCTGGGCAGGAGCAGCATACAATGCTGTCGTTATTGAAGCAGATGCCTTTAAAGAATCAGATGTTATATATAAGGCCCTCAGTTCAAGAGGGCATCATGACATGATAAAAACAGCAGAATTGGTACACCAATCATCCACAGATGCAGCCTCATCACTACTGGTAACAGCACTGAATGAGGGGAGAGATGTCATTATGGATGGTACATTCTCCTGGGTACCATTTGTTGTGCAGACAATAACAATGGCCAGAAATGTCCATCGCCGCCGATACCGAATGGGAGCAGGCTACAAGGTAAATGAGGACGGAAGTGTTACTGAAAGCTACTGGGAAAGAATTCAAGATGAAGAGCCTGAACAAGTTGGAGGCAAAAAGAGAAAACCATATAGGATAGAGCTGGTTGGAGTAGTGTGTGATGCTTACCTTGCAGTCATAAGGGGCATAAGGAGAGCTATCATGTGTAGAAGAGCAGTGAGAGTGAAGCCACAATTGAAATCCCACAAGAGATTTGCTGATGCATTTCTCACTTACTGTCAGCTAGTAGACAATGCCAGGCTATACAGTACAAATGCTTTGGAAGGTCCACCCAAGTTGATAGGATGGAAAGATAGAGACAAGACATTGCTTGTGGATCCAGATGAAATTGATTGTTTGAAGAGGGTTGCTAGGTTGAATGAAGATGCAGACTCAATTTATGAACTCTATAAGCACCCTAATCCAACATGTGAAGCTGGATCCATATGGAAAGACATTGTATTATCACCTTCAAGGTTGAACATCCAACAAGAGCTGAAGTATTCCATCGAAAAGGTTGAGAAATATTTGAACCATAATTCTATCTTCGTGGATCAGTCATGA 2433 0.4275 MTNIFEKQPSPEASNYASSRGVSGDDKEIGYRGGTSKRYLLANNSSLHFSTIKFDMNCARMVMAELVGTFILMFCVSGIIASTQLQNGAVGLLEYAATAGLTVVVIIFSIGPISCAHVNPAVTIAFATIGQFPWFKVPIYIISQLVGSVLGTYIGSLVYGIKPDVMMTKPMQGCNSAFWVELIATFIIMFLVVALTSEPQSVGHLSGIVAGIAIGLAVLITGPVSGGSMNPARSLGPAIISWKFKDIWIYILAPTVGAVAGALMFRFLRLRDQHCSTLSSPNICDVGRSIPFCANYNGSKPSFTKIILVSSIGLIFAAAMHYRLKIMRDRKIIPRLRFSKASQAPKLERFSHYVARQMGFKDRRNCPHLCKLASEYIRKSEGCEDDIYAFFENEPDADSLFVKLVEEFERCILSYFAYHWSRGDALISQVLSSDNEPKKKLKHIVMAATRDQRVERVTKNLKVARVFNTLVEEMRAMGFVSNDDNRCTEVMAPVAHSDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAYNAVVIEADAFKESDVIYKALSSRGHHDMIKTAELVHQSSTDAASSLLVTALNEGRDVIMDGTFSWVPFVVQTITMARNVHRRRYRMGAGYKVNEDGSVTESYWERIQDEEPEQVGGKKRKPYRIELVGVVCDAYLAVIRGIRRAIMCRRAVRVKPQLKSHKRFADAFLTYCQLVDNARLYSTNALEGPPKLIGWKDRDKTLLVDPDEIDCLKRVARLNEDADSIYELYKHPNPTCEAGSIWKDIVLSPSRLNIQQELKYSIEKVEKYLNHNSIFVDQS* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1898 810 SUPERFAMILY Aquaporin-like 56 273 IPR023271 -
Lja5g1898 810 CDD MIP 60 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g1898 810 PANTHER UNCHARACTERIZED 295 803 IPR044802 -
Lja5g1898 810 Pfam Zeta toxin 495 606 IPR010488 GO:0005524|GO:0016301
Lja5g1898 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 628 IPR027417 -
Lja5g1898 810 MobiDBLite consensus disorder prediction 1 24 - -
Lja5g1898 810 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 295 803 - -
Lja5g1898 810 Pfam Major intrinsic protein 57 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g1898 810 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g1898 810 PRINTS Major intrinsic protein family signature 99 123 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g1898 810 PRINTS Major intrinsic protein family signature 136 155 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g1898 810 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g1898 810 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g1898 810 PRINTS Major intrinsic protein family signature 60 79 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g1898 810 MobiDBLite consensus disorder prediction 1 21 - -
Lja5g1898 810 Gene3D Glycerol uptake facilitator protein. 35 277 IPR023271 -
Lja5g1898 810 ProSitePatterns MIP family signature. 117 125 IPR022357 -
Lja5g1898 810 Gene3D - 483 720 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1898 Lja-Chr5 23209352 23217489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1898 62 279 Major Intrinsic Protein MIP AT5G37820 39.726 8.51e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1898 - - mtr:MTR_1g070385 1387.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1898 5 23209352 23217489 Lja5g1898 5 23209352 23217489 ECH
Lja1g1059 1 10569339 10576128 Lja5g1898 5 23209352 23217489 PCT