Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1889 ATGGAGGCCTCAATTGATGTGTTACCACCTAAACGCCCCGCCCCAAGTGGAATTTCTCCTCAGGGACATAAAAGACTGAAACTATCTAGTGATAGTCTGCCATACTCAGCACATGGTAAAGCTGTACAAGAGACACCTACAAATGTTGAAGACTTCAGCAATCCATTTGCAATCTCTAATTTTTTAAATCGTTTAGAAAGTGGAAAATTTGGAAGTGTCACAAAGGACATAGAGGCCCTTATAACCCGAAAAATGCAAGTACTGGGCCCTTTCTTTGCAAAATTTCCTAAACTTGTTACTCAATCATTAAAAGTGGTTGTGAACCACAATGAAGAAAGTAATAAGTTGGAAAATAAAAAAGGTACCATCATGTCACATGATAAAGTAATAGATTTGGAAGAGGAGCGCACTAAAAAGGATGCTTCTGCAGCACAGCCTGTTGTGATTATTGATTCGGATGAGGAAGATGATAGAGATAAAAATTCCTCTTCTCTTCCATTTAATGAAGTAATGTTTCCGAACTCACTCCAATCTCCTGCATTGAGGATGATGGGGTATCGTGCTCCCATTGGTTACCATGGAGAAAGTGAAGATCTCAAATGTGAGCCAACTCGGGCTGCTAAAGATAAAACTCAGAGAGATAAAGGTGTTTATGTTGGTGTACAGGAGGAAAATGAGGTTGATACTGAAGATGATGGGCTTGATGATATTTGGAGGGAAATGTCAATGGCCGTAGAATGTTCGAAGGATGCTTCTGTGAATCCTCCACCTGAGGAAGAAGTTGAAAAAGAAGACGACTGTGATCATTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGTGTTTGTGGCGTCATTGACCGAGGAATTGAAACCATATTTGAGTTCCAGTACAAGGTTAAAAGGAGCACAAGAACTTACATGGCTGATTCATGGAATGCCAAAGCAAAAGTTGATGTATATGGAATTAATATTGCTGAAGATGACATCATGTTTACTGAAATTTCAGCACATCCTAGGCATATGAAACAAATGAAGTCTCATCAAATTGAAGGGTTCAATTTTCTCGTTAGAAACCTTGTAGGTGACAATCCTGGGGGCTGCATCTTGGCCCATGCTCCAGGATCTGGGAAGACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGAAAGTACCCAAATGCTAGACCTCTGGTGGAGTTTCAGACATGGCAAGTGGAGGACATACCACTTTACGATTTTTATACTGTGAAGGCAGACAGTAGATCACAGCAGTTGGAAGTTTTGAAACAATGGGTGGAATGCAAGAGCATCCTTTTCTTGGGGTACAAGCAGTTCTCTTCAATTGTCTGTGATAATAGTACTAACAGCATATCAATATCTTGCCAAGATATATTGCTTAAGGTACCTTCAATTCTCATTTTAGATGAAGGACATAATCCACGGAATGAGAATACCGATATGGTGCAGTCCCTTGCAAAGGTAAAAACACCTAGAAAAGTTGTACTGTCAGGTACCTTGTATCAAAACCATGTGAAGGAGGTATTTAATATTTTGAATCTGGTTCGGCCAAAGTTTCTAAAGATGGAAACATCTAGGCCTATTGTCAAGCGCATTCACAGTAGAGTACATATATCAGGCAAGAAATCTTTCTATGATTTGGTGGAGGACACTTTGCAGAAGGACCCAGATTTTAAAAGGAAAATAGCTGTTATTCAAGATTTGCGTGAGATGACGAGTAAGGTACTTCACTATTACAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTGGTTGATTTTACTGTGTTGCTTAAGCTGACCCCAAAACAGAAGCATGAAACTGGGAAATTAAAGAATATATCTAGAAAGTTCAAGGTATCTTCTATGGGCAGTGCGCTGTATCTTCACCCTAGATTGATACCTGTTGCGGATAAATGTGGTGAAAACTCTGTATCTGACCAAATGGTGGGTGATTTAATAGAGAAGTTGGATGTGAAAGATGGAGTGAAGTCGAAATTCTTCATGAACATTCTAAATTTGTGTGAATCATCCAACGAGAAGCTTCTGGTGTTCAGCCAATATCTCTTACCTTTGAAATATTTAGAGAGGTTAGTTATGAAATGGAAAGGTTGGAGTTTTGGGAAAGAAATCTTCGGAATCTCAGGGGAATCTAGCTCTGAGCAAAGGGAGTGGTCCATGAACAAATTCAACAATTCACCGGATGCTAAAATCTTCTTTGGCTCAATCAAGGCTTGTGGAGAGGGCATATCATTGGTTGGGGCATCCCGAGTACTCATTTTGGATGTTCATCTGAACCCATCAGTTACTCGTCAAGCTATTGGTCGTGCATTCCGACCAGGACAGACAAAGAAGGTCTTTGTGTATCGATTGATAGCTGCTGATTCTCCAGAAGAGGATGATCACATTACTTGTTTCAAGAAGGAATTGATTTCAAAGATGTGGTTTGAATGGAATGAGTACTGTGGTGATAGGGCCTTCCAAGTTGAGACCGTTAGTGTCAATGAATGTGGTGATGAGTTCCTTGAGACTCCAATGTTAGGAGAAGATGTAAAAGCTTTGTATAAAAGTTGA 2598 0.3965 MEASIDVLPPKRPAPSGISPQGHKRLKLSSDSLPYSAHGKAVQETPTNVEDFSNPFAISNFLNRLESGKFGSVTKDIEALITRKMQVLGPFFAKFPKLVTQSLKVVVNHNEESNKLENKKGTIMSHDKVIDLEEERTKKDASAAQPVVIIDSDEEDDRDKNSSSLPFNEVMFPNSLQSPALRMMGYRAPIGYHGESEDLKCEPTRAAKDKTQRDKGVYVGVQEENEVDTEDDGLDDIWREMSMAVECSKDASVNPPPEEEVEKEDDCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMADSWNAKAKVDVYGINIAEDDIMFTEISAHPRHMKQMKSHQIEGFNFLVRNLVGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWVECKSILFLGYKQFSSIVCDNSTNSISISCQDILLKVPSILILDEGHNPRNENTDMVQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKMETSRPIVKRIHSRVHISGKKSFYDLVEDTLQKDPDFKRKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVLLKLTPKQKHETGKLKNISRKFKVSSMGSALYLHPRLIPVADKCGENSVSDQMVGDLIEKLDVKDGVKSKFFMNILNLCESSNEKLLVFSQYLLPLKYLERLVMKWKGWSFGKEIFGISGESSSEQREWSMNKFNNSPDAKIFFGSIKACGEGISLVGASRVLILDVHLNPSVTRQAIGRAFRPGQTKKVFVYRLIAADSPEEDDHITCFKKELISKMWFEWNEYCGDRAFQVETVSVNECGDEFLETPMLGEDVKALYKS* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1889 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 529 IPR027417 -
Lja5g1889 865 Gene3D - 315 556 IPR038718 -
Lja5g1889 865 Pfam SNF2-related domain 366 612 IPR000330 GO:0005524|GO:0140658
Lja5g1889 865 SMART ultradead3 342 544 IPR014001 -
Lja5g1889 865 Pfam Helicase conserved C-terminal domain 678 788 IPR001650 -
Lja5g1889 865 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 18 864 IPR044567 GO:0080188
Lja5g1889 865 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 360 527 IPR014001 -
Lja5g1889 865 Gene3D - 597 846 IPR027417 -
Lja5g1889 865 MobiDBLite consensus disorder prediction 1 27 - -
Lja5g1889 865 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 675 841 IPR001650 -
Lja5g1889 865 SMART helicmild6 704 789 IPR001650 -
Lja5g1889 865 CDD SF2_C_SNF 663 800 - -
Lja5g1889 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 827 IPR027417 -
Lja5g1889 865 MobiDBLite consensus disorder prediction 135 167 - -
Lja5g1889 865 PANTHER PROTEIN CHROMATIN REMODELING 35 18 864 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1889 Lja-Chr5 23029674 23036938 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1889 686 807 RAD5 or RAD16-like Gene Family AT5G43530 37.705 2.86e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja5g1889 SNF2_N 4.9e-09 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1889 K10875 - gmx:100780454 1320.06