Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1884 ATGTCCATGTCGCTGATTTTGCATGCAGGGAAATCAAACAAAAATGCCTACAAGGCACTCATTGCAGCAGAGTATGCTGGTGTGCAAGTTGAGTTGGCCCCAAATTTCGAGATGGGTGTTTCTAACAAGACTCCCGAATTTCTCAAAATGAATCCTATTGGAAAGGTCCCAGTGTTGGAAACCCCAGATGGTCCTGTTTTTCCTGTATTTGAGAGCAATGCTATTGCTCGTTATGTTGCTCGATCAAAGGATGACAACACTTTGTATGGGTCTTCTTTGATTGAATATGCTCAAATTGAACAATGGATTGATTTTGCATCTATGGAAATTGATGCTAATATCACCAAGTGGTACTATCCAAGAGCTGGATATGCACCATTCCTTCCTCCAGCTGAGGAATTTGCAATTACTTCACTGAAGAGAGCTTTGAGTGCTTTGAACAGCCACCTTGCCACCAATACTTATCTAGTTGGGCATTCTGTGACCCTGGCTGACATAATATTGACATGCAATTTGTATCTTGGTTTTGCCTATATCCTAGTCAAGAGCTTCACATCTGAGTTTCCTCATGTTGAGAGATACTTTTGGACCTTGGTCAATCAGCCAAACTTCCGAAAGATTGTAGGTCAGGTCAAGCAGGCTGAAGCTGTACCAGCTGTTCAATCTGCTAAGAAGCCTTCCCAGCCAAAGGAATCTAAGCCCAAGGCAAAGAGTGAGCCTAAGGCAGTGGCCAAGAAAGAGCCAGAGCCCAAAGAAGAAGAAGAGGAGGTAGCCCCCAAGCCCAAAGCCAAGAATCCCCTTGATCTTCTTCCTCCAAGTAAGATGGTTCTGGATGAGTGGAAAAGGCTCTACTCCAACACTAAAACCAACTTCCGTGAGGTCGCAATCAAAGGATTTTGGGACATGTATGATCCCGAGGGATACTCTCTGTGGTTCTGTGATTACAAATACAACAGTGAGAACACTGTTTCCTTTGTGACATTGAACAAGGTTGGTGGATTTCTTCAGCGAATGGATTTGGCCCGCAAGTATGCATTTGGAAAGATGCTTGTGATTGGATCAGAGCCTCCATTTAAGGTGAAGGGCTTGTGGCTTTTCCGTGGCCAAGAAGTCCCTCAATTTGTCATTGATGAGTGCTATGACATGGAGCTTTATGAGTGGACAAAGGTTGACATCAATGATGAAGCTCAAAAGGAGCGTGTCAATCAGATGATTGAAGATTATGAACCTTTTGAGGGCGAATCTCTTTTGGATGCCAAGTGCTTCAAGTGA 1272 0.4387 MSMSLILHAGKSNKNAYKALIAAEYAGVQVELAPNFEMGVSNKTPEFLKMNPIGKVPVLETPDGPVFPVFESNAIARYVARSKDDNTLYGSSLIEYAQIEQWIDFASMEIDANITKWYYPRAGYAPFLPPAEEFAITSLKRALSALNSHLATNTYLVGHSVTLADIILTCNLYLGFAYILVKSFTSEFPHVERYFWTLVNQPNFRKIVGQVKQAEAVPAVQSAKKPSQPKESKPKAKSEPKAVAKKEPEPKEEEEEVAPKPKAKNPLDLLPPSKMVLDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNSENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEVPQFVIDECYDMELYEWTKVDINDEAQKERVNQMIEDYEPFEGESLLDAKCFK* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1884 423 PANTHER - 3 423 - -
Lja5g1884 423 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 263 423 IPR001662 GO:0003746|GO:0006414
Lja5g1884 423 SUPERFAMILY eEF1-gamma domain 264 423 IPR036433 GO:0003746|GO:0006414
Lja5g1884 423 SUPERFAMILY Thioredoxin-like 3 90 IPR036249 -
Lja5g1884 423 CDD GST_N_EF1Bgamma 7 82 - -
Lja5g1884 423 Pfam Glutathione S-transferase, N-terminal domain 3 81 IPR004045 -
Lja5g1884 423 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 263 423 IPR036433 GO:0003746|GO:0006414
Lja5g1884 423 Gene3D Glutaredoxin 3 79 - -
Lja5g1884 423 Pfam Glutathione S-transferase, C-terminal domain 137 202 IPR004046 -
Lja5g1884 423 SFLD Glutathione Transferase (cytosolic) 7 195 IPR040079 -
Lja5g1884 423 SMART EF1G_2 262 370 IPR001662 GO:0003746|GO:0006414
Lja5g1884 423 CDD GST_C_EF1Bgamma_like 95 215 - -
Lja5g1884 423 MobiDBLite consensus disorder prediction 228 262 - -
Lja5g1884 423 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 220 IPR010987 -
Lja5g1884 423 MobiDBLite consensus disorder prediction 218 270 - -
Lja5g1884 423 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 3 423 IPR044628 GO:0004364
Lja5g1884 423 SUPERFAMILY GST C-terminal domain-like 78 215 IPR036282 -
Lja5g1884 423 Gene3D - 85 222 - -
Lja5g1884 423 SFLD Main (cytGST) 7 195 - -
Lja5g1884 423 Pfam Elongation factor 1 gamma, conserved domain 262 370 IPR001662 GO:0003746|GO:0006414
Lja5g1884 423 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 87 IPR004045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1884 Lja-Chr5 22917322 22918639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1884 3 423 Eukaryotic Initiation Factors Gene Family AT1G57720 74.822 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1884 K03233 - gmx:547637 695.271