Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1881 ATGGCTGTTATTCTTACCTGTGTTTTCTGTTCCTTTCTCTTAATCATTTTCACATTTCAAGCCAACGCCGCAAACAACACACAAAACTTTCACTACTTCTGTGATTTTAATAACAGGGGTAACTTCACAGCCAACAGCACCTACCACACCAACCTCAACACCCTTTTGTCCACTCTCACTTCCAACACAGAAATTAACTACAGTTTCTATAATTTCTCAAATGGTGGTGAAAACAGTACTAACAAAGTAAACGCCATTGGACTGTGTAGAGGTGATGTTGCCCCAGATGAGTGCCGCAGTTGCCTCAGCAGTTCAAAAGCCAATCTCACACAACTTTGTCCAAACCAGAAAGAGGCGATTGGGTGGTATGAAGATGAGAAATGCATGCTGCGCTACTCAGACCGACCAATATTTCACAATATGGAAGATGTCCCCGGATACTATGCCCATAACATGATGAACGCAACCAATTTGAATGAGTTCAATGTAGTGGTGAGGAAATTGCTGGAGAATTTAACAAGCAAAGCTGCATCAGGAGACTCTCATCTGAAATATGCTGCATCAAGGGCACCAAGTCCTGATTCTCAGACCATTTATGGTCTGGTGCAGTGCACTCCTGATTTGGATGAGACACAATGCAATGCTTGCTTGATTGAGTCTATCGCGCAAATGGACAAAGATTGTTGTAGAGACAAGATTGGTGGCAGAGTGGTGAGGCCAAGCTGTTATATGAGATATGAAACCAATTTCCTATTCTATGGACTAACAGCTACACCTGCACCTGCACCGCTACCACAGCCACCTCACCCATCAACCACCACCACCACTAGTAACAACACTACTTCACCAGGAAGAAGCAACAAAACTCTCACTGTCATCGCCATAGTTGTACCAATTGTTGCTGCTATGGTTGCGAGGAAGCCGACGAGAAAGATTGAAAGTAATACAGACGACTTTTCTAATTCTAATAAACTTGGACAAGGTGGATTTGGAGCTGTATACAGGATTGCTGTCAAAAGGCTGTCAAGGAATTCTGCACAAGCAGATCTAGAATTTAGGAATGAAGTACTTTTAGGGGCTAAACTTCAGCATCGAAATTTAGTTAGACTACTTGGATTCTGTCTGAAAAAAAGGGAAAGGCTACTTGTCTATGAATTTTTTCCTAACAAAAGTCTTGACTACTTCATATTTGATCAAACCAAGAGAGCACAATTATATTGGGAAATGCGCTACAAAATCATTGCAGGTATTGCTCGAGGCATTCTTTACCTTCACGAGGATTCTCGACTACGCATAATCCATCGTGATCTAAAAGCAAGCAACATACTGTTAGACGATGAGATGAATCCTAAGATATCCGATTTTGGCATGGCAAGACTATTTGTTGTGGATCAAACTCAAGAAAATACAAATAGAATTGTTGGAACCTATGGCTATATGGCACCTGAATATTCATTGCTATTGAGCAAATTCCTGCAGGCATGGAAAAACTGGAGGGATGGATCAGCTACAAATATTATAGATCTGGCATTAAGCAGTGATTCCCGAAATGAGATGATACGATGCATCCACATTGGGTTACTCTGTGTTCAAGATAACGTTGCTAGCAGGCCAACCATGGCTTCTGTTGTCCTGATGCTTAATAGTTACTCTGTCACTCTTCCAGTGCCTACAGAACCTGCATTTTATGTGGATAGTAGAACTGAAAACCTTCCAGACATGCAGTCATGGGAGTATAGTTCAGCTCAAGGTTCAGTCAGTGAGGCTTCAATTACAGAGCTACATGCTCGCTAG 1794 0.4186 MAVILTCVFCSFLLIIFTFQANAANNTQNFHYFCDFNNRGNFTANSTYHTNLNTLLSTLTSNTEINYSFYNFSNGGENSTNKVNAIGLCRGDVAPDECRSCLSSSKANLTQLCPNQKEAIGWYEDEKCMLRYSDRPIFHNMEDVPGYYAHNMMNATNLNEFNVVVRKLLENLTSKAASGDSHLKYAASRAPSPDSQTIYGLVQCTPDLDETQCNACLIESIAQMDKDCCRDKIGGRVVRPSCYMRYETNFLFYGLTATPAPAPLPQPPHPSTTTTTSNNTTSPGRSNKTLTVIAIVVPIVAAMVARKPTRKIESNTDDFSNSNKLGQGGFGAVYRIAVKRLSRNSAQADLEFRNEVLLGAKLQHRNLVRLLGFCLKKRERLLVYEFFPNKSLDYFIFDQTKRAQLYWEMRYKIIAGIARGILYLHEDSRLRIIHRDLKASNILLDDEMNPKISDFGMARLFVVDQTQENTNRIVGTYGYMAPEYSLLLSKFLQAWKNWRDGSATNIIDLALSSDSRNEMIRCIHIGLLCVQDNVASRPTMASVVLMLNSYSVTLPVPTEPAFYVDSRTENLPDMQSWEYSSAQGSVSEASITELHAR* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1881 597 MobiDBLite consensus disorder prediction 271 286 - -
Lja5g1881 597 Gene3D - 28 136 IPR038408 -
Lja5g1881 597 Gene3D - 146 250 IPR038408 -
Lja5g1881 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Lja5g1881 597 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 494 588 - -
Lja5g1881 597 Gene3D Transferase(Phosphotransferase) domain 1 387 555 - -
Lja5g1881 597 Pfam Salt stress response/antifungal 154 248 IPR002902 -
Lja5g1881 597 Pfam Salt stress response/antifungal 34 134 IPR002902 -
Lja5g1881 597 SMART serkin_6 319 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1881 597 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 9 303 - -
Lja5g1881 597 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 312 486 - -
Lja5g1881 597 ProSiteProfiles Protein kinase domain profile. 319 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1881 597 Pfam Protein kinase domain 320 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1881 597 ProSiteProfiles Gnk2-homologous domain profile. 30 137 IPR002902 -
Lja5g1881 597 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 303 - -
Lja5g1881 597 SUPERFAMILY Protein kinase-like (PK-like) 310 576 IPR011009 -
Lja5g1881 597 ProSiteProfiles Gnk2-homologous domain profile. 143 251 IPR002902 -
Lja5g1881 597 Gene3D Phosphorylase Kinase; domain 1 285 386 - -
Lja5g1881 597 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 494 588 - -
Lja5g1881 597 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 312 486 - -
Lja5g1881 597 MobiDBLite consensus disorder prediction 261 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1881 Lja-Chr5 22811983 22816914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1881 1 597 Receptor kinase-like Gene Family AT4G21410 42.029 1.09e-163 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja5g1881 Pkinase 7.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1881 - - vun:114191428 674.085