Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1880 ATGATGCAGGGCATTCTAGAAAACGTTGTTGCCGGTTCTCACGTCTGGGTTGGAGATCCAGAACTAGTTTGGATTGATGGACAAGTTTTGAATATTAATGGAGAAGAAGCTGAAATTCAAACAAGCAATGAGAAGAAGGTTGTTTCCCGTTTATCAAAGCTACATCCCAAGGATACAGATGCTCCTACTGATGGAGTTGATGACATGACCAAGCTTGCTTATCTGCATGAGCCTGGAGTGTTGCATAATTTGGAAACTAGATACAAGATCAATGAAATATATACTTATACTGGAAATATTCTTATTGCGATAAATCCCTTCCAAAGTCTTCCTCATCTGTATGATGTTAATGTGATGAAAAGTTACAAGGGAGCAGTAGTTGGAGATTTAAGCCCACATGTTTTTGCTATTGCTGAAGCAGCGTATAGGGCCATGATTACTGAGGAGAAAAGCAACTCTATTCTGGTTAGTGGCGAGAGTGGTGCTGGAAAGACAGAAACCACCAAAATGCTAATGTGTTACCTGGCATTTTTGGGGGGTCACACTGCATCTGAAGGACGGACTGTTGAAAAACAAGTTCTAGAATCAAACCCAGTCCTTGAAGCATTTGGTAATGCAAAAACTGTAAGAAATGACAATTCCAGCCGTTTCGGAAAATTTGTTGAGATTCAATTTAATAAGTATGGACGAATATCCGGGGCAGCCATTAGAACTTATCTGCTGGAGAAATCTCGCGTTTGCCAAATCTCAGATCCTGAGCGTAATTATCACTGTTTCTACCTTCTCTGCGCTTCTCCTCCTGAGGATAAGGAGAAATATAAGTTGGGAGATCCCAGATCATTTCACTACCTTAATCAATCCAGTTGCTATGAATTAGCTGGTGTAAATGCTGCTCAAGAGTATCTTAGCACCAAGAGAGCCATGGATATCGTGGGAATCAGTCAGGAGGAGCAGGATGCAATTTTCAGAGTTGTAGCTGCTATTCTTCATCTTGGAAACATTAAGTTTGCAAAGTCAGAAGATTCTGATTCATCAGTTCTAGAAGATGAAGAATCCATTTTCCGTCTCCAAACAACAGCAGAACTTCTAATGTGTGAACCTGATGCTTTAGAAGTCGCACTTTGTAAGCGCGTGATGATCACCCCAGAAGAAATCATCAAGAGAAGTCTTGATCCTATTGGTGCAACAGTTAGCAGGGATGGTCTAGCCAAGACATTATATTCTCGTTTATTTGACTGGATAGTCAATAAAATCAATAACTCCATTGGGCAGGATCCTAGCTCAAAATATCTCATTGGTGTTCTTGACATATACGGCTTTGAAAGCTTTCGAACTAATAGTTTTGAGCAATTTTGTATTAATTTCACAAATGAAAAGCTGCAGCAGCACTTCAACCAGCATGTGTTTAAGATGGAGCAAGAGGAATACACAAAAGAAAGGATTGACTGGAGCTACTTAGAATTTGTAGATAATCAAGATGTATTGGATCTCATTGAAAAGAAACCGGGTGGAATCATAGCTCTGCTTGATGAAGCTTGTATGTTTCCCAAGTCAACTCATGAAACATTTGCACAAAAGCTTTATCAGACATTCAAAGATCACAAACGCTTCATCAAGCCTAAATTGGCACGCTCTGACTTTACTATTGTTCATTATGCAGGGGAGGTTCAGTATCAGTCTGAGCAGTTTATAGACAAAAACAAAGACTATGTTGTTCCTGAACATCAAGACATGCTAAGCACTTCCAAATGTTCATTTGTATCAGGCCTTTTTCCTCCACTTTCTGAGGAGACAGCCAAATCTGCAAAGTTTTCTTCTATTGGTTCTCGTTTTAAGCTACAATTACAACAACTGATGGAGACGCTCAATCTGACAGAGCCTCACTATATTAGATGTGTGAAGCCTAATAATCTATTAAAACCTGGCATATTTGAGAATATGAACATCATCCAACAATTACGTTCTGGTGGTGTTCTTGAAGCTGTAAGAATTAAATGTGCTGGATTCCCCACTCACAGAACATTTCATGATTTTTTAACTCGATTAGGCATTCTTGCACCTGAGGTTATTCGAGGAAACTTTGAAGAAAAGGATAAATGTAAAATGCTTTTGGAGAAGATTGGGCTGACAGGTTATCAGATAGGGGAAACACAAATATTTCTAAGAGCTGGTCAGATGGCTGAATTGGATGCTCGGAGGGCACGCGTACTTAGCAAGTCTGCAACTATTATCCAGAAGCAGAGTAGAACTCATTTTAGTCGAAAAACATATATTGCATTGCGAAAGTCCTCTGTCACGGTGCAGTCCTTTTGCAGAGGAGAATTGGCCCGGATATCATATTATCACATGAAGAGGGAAGCAGCTGCAATCAGAATTCAGATGTACACGCGTGGAAAATTAGCCAGAAAATGGTACACTGAAATAAGGATTTCTGCCATTGTCTTGCAGACAGGTTTTCGGGTAATGGCTGATTGCTATAAATTGAGATATAGAAAGCAAAGTAAAGCTTCAACTCATATTCAGTCTTACTGGCGTAGACATAAAGCTCTCGTTGAATATCAGGACCTTAAAAAGGTGTCAATCATTCCACAAAGCGTCAACCATCCCACGGATGAACATGAACATGAACATGAACATGAACATGAATATGAACATGAACATGAACATGAACATAAGGTTTTGGAGATATCAGTAGAAAATGAAAGTCCTTGTGTGGAAGAATCTTCAAATTCTTCCAAAGAAGAATCCTCAAGTCCTTTTCAAGATAATGAAAGCATTGAAGCGATCAGGGATTCCTCTAGTCCTTTGGGAGACACTGAAAAGTATGAGGCTCTCACTGCAGAAATAAAAAACTTGAAGGTCATGTTGCAGGAGGAAAAACAAAAAGCTGATGAATATGAAAGGAAATACGTAGAAGCTCAAGAATCAAGCGAAGAGTTACGGAAAAAATTAGCAGAAACTGAAAAAAGAGTATATCAGCTTCAGGACTCATTAAACAGTGTGTATCAGGATGATATCTTCCATGTCAAGTCAAGTTGCCGAGCTGAAGATGATCTTAAGCACTTCTTCAAGATTGAGTTCAACTTTTCGACCTATTGCTAG 3102 0.3933 MMQGILENVVAGSHVWVGDPELVWIDGQVLNINGEEAEIQTSNEKKVVSRLSKLHPKDTDAPTDGVDDMTKLAYLHEPGVLHNLETRYKINEIYTYTGNILIAINPFQSLPHLYDVNVMKSYKGAVVGDLSPHVFAIAEAAYRAMITEEKSNSILVSGESGAGKTETTKMLMCYLAFLGGHTASEGRTVEKQVLESNPVLEAFGNAKTVRNDNSSRFGKFVEIQFNKYGRISGAAIRTYLLEKSRVCQISDPERNYHCFYLLCASPPEDKEKYKLGDPRSFHYLNQSSCYELAGVNAAQEYLSTKRAMDIVGISQEEQDAIFRVVAAILHLGNIKFAKSEDSDSSVLEDEESIFRLQTTAELLMCEPDALEVALCKRVMITPEEIIKRSLDPIGATVSRDGLAKTLYSRLFDWIVNKINNSIGQDPSSKYLIGVLDIYGFESFRTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKERIDWSYLEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFIKPKLARSDFTIVHYAGEVQYQSEQFIDKNKDYVVPEHQDMLSTSKCSFVSGLFPPLSEETAKSAKFSSIGSRFKLQLQQLMETLNLTEPHYIRCVKPNNLLKPGIFENMNIIQQLRSGGVLEAVRIKCAGFPTHRTFHDFLTRLGILAPEVIRGNFEEKDKCKMLLEKIGLTGYQIGETQIFLRAGQMAELDARRARVLSKSATIIQKQSRTHFSRKTYIALRKSSVTVQSFCRGELARISYYHMKREAAAIRIQMYTRGKLARKWYTEIRISAIVLQTGFRVMADCYKLRYRKQSKASTHIQSYWRRHKALVEYQDLKKVSIIPQSVNHPTDEHEHEHEHEHEYEHEHEHEHKVLEISVENESPCVEESSNSSKEESSSPFQDNESIEAIRDSSSPLGDTEKYEALTAEIKNLKVMLQEEKQKADEYERKYVEAQESSEELRKKLAETEKRVYQLQDSLNSVYQDDIFHVKSSCRAEDDLKHFFKIEFNFSTYC* 1034
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1880 1033 ProSiteProfiles IQ motif profile. 760 789 IPR000048 GO:0005515
Lja5g1880 1033 Pfam IQ calmodulin-binding motif 787 805 IPR000048 GO:0005515
Lja5g1880 1033 Pfam IQ calmodulin-binding motif 761 780 IPR000048 GO:0005515
Lja5g1880 1033 Pfam IQ calmodulin-binding motif 739 757 IPR000048 GO:0005515
Lja5g1880 1033 Pfam IQ calmodulin-binding motif 835 853 IPR000048 GO:0005515
Lja5g1880 1033 Gene3D - 669 732 - -
Lja5g1880 1033 ProSiteProfiles Myosin motor domain profile. 64 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g1880 1033 SMART iq_5 832 854 IPR000048 GO:0005515
Lja5g1880 1033 SMART iq_5 784 806 IPR000048 GO:0005515
Lja5g1880 1033 SMART iq_5 759 781 IPR000048 GO:0005515
Lja5g1880 1033 SMART iq_5 736 758 IPR000048 GO:0005515
Lja5g1880 1033 PRINTS Myosin heavy chain signature 94 113 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g1880 1033 PRINTS Myosin heavy chain signature 198 225 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g1880 1033 PRINTS Myosin heavy chain signature 431 459 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g1880 1033 PRINTS Myosin heavy chain signature 484 512 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g1880 1033 PRINTS Myosin heavy chain signature 151 176 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g1880 1033 MobiDBLite consensus disorder prediction 902 932 - -
Lja5g1880 1033 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 788 IPR027417 -
Lja5g1880 1033 MobiDBLite consensus disorder prediction 866 938 - -
Lja5g1880 1033 MobiDBLite consensus disorder prediction 868 897 - -
Lja5g1880 1033 PANTHER MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN 8 1026 - -
Lja5g1880 1033 SMART MYSc_2a 58 735 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g1880 1033 Gene3D - 441 625 - -
Lja5g1880 1033 CDD MYSc_Myo11 78 722 IPR036018 -
Lja5g1880 1033 Gene3D Myosin VI head, motor domain, U50 subdomain 314 603 - -
Lja5g1880 1033 ProSiteProfiles IQ motif profile. 737 766 IPR000048 GO:0005515
Lja5g1880 1033 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 10 59 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lja5g1880 1033 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 861 IPR027417 -
Lja5g1880 1033 Gene3D - 736 786 - -
Lja5g1880 1033 Gene3D - 787 835 - -
Lja5g1880 1033 ProSiteProfiles IQ motif profile. 833 858 IPR000048 GO:0005515
Lja5g1880 1033 Pfam Myosin head (motor domain) 66 722 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g1880 1033 ProSiteProfiles IQ motif profile. 785 809 IPR000048 GO:0005515
Lja5g1880 1033 Pfam Myosin N-terminal SH3-like domain 11 48 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lja5g1880 1033 Gene3D Kinesin motor domain 67 664 IPR036961 -
Lja5g1880 1033 Coils Coil 942 997 - -
Lja5g1880 1033 Gene3D - 254 312 - -
Lja5g1880 1033 PANTHER MYOSIN 8 1026 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja5g1880 Lja-Chr5 22698776 22713773 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1880 4 1001 Myosins gene family AT1G54560 63.214 0.0 1375
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1880 K10357 - gmx:100803485 1694.09
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1880 5 22698776 22713773 Lja5g1880 5 22698776 22713773 ECH