Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1879 ATGGAAGAAAACTATCTGGACAGAAATGCCTGGGCATGGCCATCAAGAACCTATGCTTGTAGCTTTTGCAAGAAAGAGTTCAAGTCTGCTCAAGCTTTGGGTGGACATATGAATATTCATAGGAGAGAAAAGGCAAGATTGAGAGCATCATCCTTACCTTCATCGGTTTCTGAGTGCCCTAAAACTAACCCTATCAATGACTCTAATCCAACAAATCTTCTTTCACCTCCTCCTAACTTCTCTGATGAGGTGTTGAATTATGCACAACCTTCTCCAATTTATATCCCTTGTGATTTTTCTTTATCTTCTCCAGTACCCTCCCCACCAGGTTCTACTAGTGAAGATAAGGTATCTCATCACTTTCCCCTTTTGAGTTCTCAAAGCGAGGAAATTACAGTAAGTAACAACAAAAGGAGTGGTTTTGATGTTGAGGAAATGAAAGGCAATGAAGAGGAAGAGGAGGAGCACAAGAATGATGAGCAAAACATTACATTGGAGTTAGGATTAGGGTTGCCTAAACAGCAAGAGGAGACGTTAGATTTGGAGCTTCGACTGGGATACTTCTAG 567 0.4109 MEENYLDRNAWAWPSRTYACSFCKKEFKSAQALGGHMNIHRREKARLRASSLPSSVSECPKTNPINDSNPTNLLSPPPNFSDEVLNYAQPSPIYIPCDFSLSSPVPSPPGSTSEDKVSHHFPLLSSQSEEITVSNNKRSGFDVEEMKGNEEEEEEHKNDEQNITLELGLGLPKQQEETLDLELRLGYF* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1879 188 Gene3D Classic Zinc Finger 13 68 - -
Lja5g1879 188 SUPERFAMILY beta-beta-alpha zinc fingers 15 45 IPR036236 -
Lja5g1879 188 SMART c2h2final6 18 40 IPR013087 -
Lja5g1879 188 MobiDBLite consensus disorder prediction 51 82 - -
Lja5g1879 188 ProSitePatterns Zinc finger C2H2 type domain signature. 20 40 IPR013087 -
Lja5g1879 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 18 45 IPR013087 -
Lja5g1879 188 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 10 187 - -
Lja5g1879 188 Pfam C2H2-type zinc finger 18 42 - -
Lja5g1879 188 PANTHER OS07G0101800 PROTEIN 10 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1879 Lja-Chr5 22693883 22694449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1879 13 188 C2H2 Transcription Factor Family AT2G42410 34.066 1.81e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g1879 zf-C2H2_6 7.9e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1879 - - lja:Lj5g3v1048180.1 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1053 1 10521254 10521922 Lja5g1879 5 22693883 22694449 PCT