Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1876 ATGGCTTCTTCAACTGGAAGTGGCTCTGGTTCTGGATCTCCATGTGGGGCATGCAAGTTCCTTAGAAGAAAGTGTGCATCTGATTGCATCTTTGCACCTTATTTTTGCTCAGAACAAGGACAAGCCAATTTTGCAGCCATTCACAAGGTGTTTGGTGCTAGCAATGTTTCCAAGATGCTTTTGCATATACCAGCTCGTGATCGTTGTGAAGCTGTTTTCACAATCGCTTATGAAGCTCAAGCTCGTGTCAGGGACCCTGTTTATGGCTGTGTCTCCCATATTTTTGCTTTACAACAACAGGTAGGGTGCTTGCAGGCACAACTGATGCAAGCCAAGGCACTGCTAGCTCAGAACCTGATGGATTCATCAAGGAACTTAGGGAATCAGTGGTCAGGGAATGTTGCTGGACAACCACCACTCAATCAATTTTGTTCAACTTATACCATGAACCCTCCAATATCTCCTCAGAGCTCGCTTGAGTCAATTGATTATAGCAGCATCAATGATGGAATGAGCTGCAATATGCAAGATATCCAAAGCAGAGAGGATTTCTCATCCCAAGCTTGTTCTAAGATCAGATCATGTAGCAATGACTTGAGTGAGCTGCAAGAACTTGCTTTCAAGATGATGAGAAACTAA 639 0.4382 MASSTGSGSGSGSPCGACKFLRRKCASDCIFAPYFCSEQGQANFAAIHKVFGASNVSKMLLHIPARDRCEAVFTIAYEAQARVRDPVYGCVSHIFALQQQVGCLQAQLMQAKALLAQNLMDSSRNLGNQWSGNVAGQPPLNQFCSTYTMNPPISPQSSLESIDYSSINDGMSCNMQDIQSREDFSSQACSKIRSCSNDLSELQELAFKMMRN* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1876 212 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 1 211 - -
Lja5g1876 212 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 211 - -
Lja5g1876 212 Pfam Lateral organ boundaries (LOB) domain 14 112 IPR004883 -
Lja5g1876 212 ProSiteProfiles LOB domain profile. 13 115 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1876 Lja-Chr5 22640562 22642043 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1876 1 212 AS2 family AT2G42430 53.061 2.91e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja5g1876 LOB 6.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1876 K13944 - gmx:100801508 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1876 5 22640562 22642043 Lja5g1876 5 22640562 22642043 ECH
Lja1g1049 1 10474532 10476190 Lja5g1876 5 22640562 22642043 PCT