Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1875 ATGAGTGGATCGGGTTCGAGTTCGAGTTCCGGTTCTCCTTGTGGAGCTTGCAAATTCTTAAGAAGGAAATGTGTGAGAGGTTGTGTTTTTGCACCTTATTTTTGCCATGAACAAGGTGCAACCCATTTTGCAGCCATTCATAAAGTCTTTGGTGCAAGCAATGTGTCAAAGCTCCTCTCTTACCTCCCTGTGAGTGACCGTTGTGAAGCTGCAGTCACAATCTCATATGAAGCTCAAGCTAGGCTTCAGGATCCAATTTATGGCTGTGTTTCCCATATCTTTTCCCTCCAACAGCAGGTGGTCAACTTACAAGCACAGCTAGCTTATCTCAAAGAACAAGCAGCTCAGACTGGTCTCAATGCCTCTTCCAATGAAAGCCCTAATGAAAAATATTTGGAAAAACCTAATAATGCTTTCCCCCAAGATCTTCAAAGTTGGTTCCAGATGGAAAATTCTAACATGGGTTCAGAATTTTCTCCAAACTTGTCCAATAATTACGCGGCAACGCAATATTATGGGAACAATACCTTAATGGATCTAAATCCTATTGGGAATAATTATCAAAATTCAGGAGTCAAGGATGAAAACAGCTCATTTTCTAGCTTTGAGGAGTGTTCAAATTCCATGTCCTATGACATGCAAATAAACAGTAGGACTTGGGGATTTGATGAAGCGGAGGACCTACATTCAGTGGCTTTTGGATACAGTTGA 711 0.4135 MSGSGSSSSSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLSYLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFSLQQQVVNLQAQLAYLKEQAAQTGLNASSNESPNEKYLEKPNNAFPQDLQSWFQMENSNMGSEFSPNLSNNYAATQYYGNNTLMDLNPIGNNYQNSGVKDENSSFSSFEECSNSMSYDMQINSRTWGFDEAEDLHSVAFGYS* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1875 236 ProSiteProfiles LOB domain profile. 12 114 IPR004883 -
Lja5g1875 236 Coils Coil 93 113 - -
Lja5g1875 236 PANTHER LOB DOMAIN CONTAINING PROTEIN 8 235 - -
Lja5g1875 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 8 235 - -
Lja5g1875 236 Pfam Lateral organ boundaries (LOB) domain 13 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1875 Lja-Chr5 22612757 22613772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1875 13 235 AS2 family AT3G58190 51.111 1.45e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja5g1875 LOB 8.8e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1875 5 22612757 22613772 Lja5g1875 5 22612757 22613772 ECH
Lja1g1048 1 10466547 10467541 Lja5g1875 5 22612757 22613772 PCT