Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1869 ATGGGAAAACCCTCAGAAACCTCATCATCATCCACTCCATCACGCAGAAGCAGCAGATCGGAGAAGCCCCATCTTCAAAGCCCCAAATCTCAATGGCCGGAGACACCAGAGAAGCCGCCGACGCGTGTCCGCAACCGCGGCGTCGCGCTCTCTATCGCCGACATCAGGAAGGTCGCCGTGGGCCTTCAGGATCGGAAGCCGCGCACTGAAACGGCGCCGTCGCAGGCCAAAACCGCCAGAAGACAGATCGTTCTGCCTTCGCCGCGTAAACCCCATATTGTCGCTGATGAACCCTTCAAGATTCCGGAGAAATATGAAATTTTCTGCAGATTCTTCGATAGCTTGGATAGTTCGATTCGGTTGCTGCGTTTGAAAGGTTCGACGCCATCGTTTACGAATGTAAGCCAGAAGATTGAATGTTTGACTGATAGGAGGTTTACACATGCTCATTTGGCTCAGTTGAAATTTATCTTGCCGGAAGCGGTGGTTATTGAGAAGATACTAGTGTTGGATGAGCGTACCAGTTGTATGAAACCAGATCTTCATGTTACTATTGACCCTGCTGCAGTAGAGTCTGCTGCAAAGGGACTCCCTCAATCTGGGAATGTGTCGCTGAGGAGGATGTTTCGCGATCGTCTCAGGGATTTTTGTAAATCTCATCCTGAGGGCGATGAAATTCCAGAGGAGGCACTGCCTGAGCCATTCAATCACCCGAAGAAAGAACATGTTTTGGACAAATTGAAAACTCCCTCATCAATTTCTACAGGGACATCATCAGGTGCATGTGTAGCTCATCCTCCAGGATCATTGTCAGCAAGCATGCAGAATAATGACATTGCAGATAACACAGATCCTGCATCAGTACCTGTCAAGACATCAATTGAAGCACTTAACCAACAACCAGTAGTAGCCTCTCACATGTCTCAGTCTTTTAGAAGGCGTTTTTCTATGAAATCTAAGGACAATGGAGCAGGCAGTGTACAGAAGCAATCTCCATCAGATTCATTCCAAATCTTGTCTTTGCCAGTTTCAGAGTCCAGCCTCAAGAAAAATCCCCCTATTGAGGGGACTGAATCGTATCCTAAAATACTACCAGCTGAGTTGGCTTCAGAAGCAGCCAGTAGTGACAAATGTCCAGAAGTTCATGTCACACCATTCAGTGCTCCATTTGCCACTCCAAGCAAAACCATTGAGTATACAGAAAACAAAGATGGGTCTCTCAAAAGCATTGATGCCATGTCAACTCCAGCTAAAAGTGTGTCTACTCCATTGAGGTTGATGACTGCCACACCTGCATTGCCTCCGCCTAGAAGAAACTATATGAGCCCTGATGATCACTCTACCAGTTCACCAAGCAAGTTAGTTAGGCGTCCGCCTCGATCAAGGTCATTGAAATTTGACACTCCAGTGAAAAGTGAAATTGATGATGATGTTTTTGATATTCTCTCGGAGGATCTTATCCAGTCGATTAGGGAAAAGGAAAGAATAGCAATGGAGGAAAGAGATCCAGCTATCTCACAAGCAAGGAGACGGCAAAAAACTATAGCCAGCCTCCCTAAGCTCTTTACCATAATTCAGATGTTATTTCATTCAATAAAGCGTTCTGTTATGACAAAAGAGGAGCTTATAAGCAAGATAATCTCAGGCAATTGTGATATTGTTGACAGAAGTGAGGTTGAAGAACAGCTGAGTTTGTTGCTAGAATTAGTACCTGAATGGATTTCTGAAAAGTTGGCCTCTAGTGGGGATTTGCTAATGTGCATAAACAAAATGTTGAATGCTGATACTCTGAGGGCATCACTTGAAGAAGCTAAATGA 1818 0.4521 MGKPSETSSSSTPSRRSSRSEKPHLQSPKSQWPETPEKPPTRVRNRGVALSIADIRKVAVGLQDRKPRTETAPSQAKTARRQIVLPSPRKPHIVADEPFKIPEKYEIFCRFFDSLDSSIRLLRLKGSTPSFTNVSQKIECLTDRRFTHAHLAQLKFILPEAVVIEKILVLDERTSCMKPDLHVTIDPAAVESAAKGLPQSGNVSLRRMFRDRLRDFCKSHPEGDEIPEEALPEPFNHPKKEHVLDKLKTPSSISTGTSSGACVAHPPGSLSASMQNNDIADNTDPASVPVKTSIEALNQQPVVASHMSQSFRRRFSMKSKDNGAGSVQKQSPSDSFQILSLPVSESSLKKNPPIEGTESYPKILPAELASEAASSDKCPEVHVTPFSAPFATPSKTIEYTENKDGSLKSIDAMSTPAKSVSTPLRLMTATPALPPPRRNYMSPDDHSTSSPSKLVRRPPRSRSLKFDTPVKSEIDDDVFDILSEDLIQSIREKERIAMEERDPAISQARRRQKTIASLPKLFTIIQMLFHSIKRSVMTKEELISKIISGNCDIVDRSEVEEQLSLLLELVPEWISEKLASSGDLLMCINKMLNADTLRASLEEAK* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1869 605 CDD Cdt1_m 97 242 IPR014939 -
Lja5g1869 605 SMART CDT1_2 101 233 IPR014939 -
Lja5g1869 605 MobiDBLite consensus disorder prediction 429 464 - -
Lja5g1869 605 Gene3D - 475 605 IPR038090 -
Lja5g1869 605 MobiDBLite consensus disorder prediction 1 48 - -
Lja5g1869 605 MobiDBLite consensus disorder prediction 1 16 - -
Lja5g1869 605 SUPERFAMILY "Winged helix" DNA-binding domain 98 235 IPR036390 -
Lja5g1869 605 Pfam DNA replication factor CDT1 like 102 194 IPR014939 -
Lja5g1869 605 Pfam DNA replication factor Cdt1 C-terminal domain 486 577 IPR032054 -
Lja5g1869 605 CDD Cdt1_c 481 602 IPR032054 -
Lja5g1869 605 MobiDBLite consensus disorder prediction 442 456 - -
Lja5g1869 605 PANTHER DNA REPLICATION FACTOR CDT1 9 605 IPR045173 GO:0003677|GO:0030174|GO:0071163
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1869 Lja-Chr5 22513998 22517531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1869 414 603 Core DNA Replication Machinery Family AT2G31270 48.325 4.07e-49 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1869 K10727 - gmx:100778818 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1869 5 22513998 22517531 Lja5g1869 5 22513998 22517531 ECH