Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1866 ATGGTTGACTTCGCCGCCTCTGGGGCTGCGAAGAAAACCAGGGAAGGAAACAACAGCGAGCGGCGGAAGCAACCAGTGAAGAAATCTGAAGGTAAAGAAGTTCAAAGGTCGTGTATAGGTGTGAGGAAAAGGCCTTGGGGGAAATTTGCTGCTGAAATCCGAGATACAACACGAAACGGGGCGAGGGTCTGGCTCGGGACATTTGATAATGAAGAGGATGCTGCTTTGGCTTATGACCAAGCTGCATTTTCCATGAGAGGTAGCAATGCTGTTCTTAATTTTCCTGTGAAAAGGGTTAAAGAATCTTTGCAAGAAATGGAAAATGATTGGGGCAAAGGGTGTTCCCCTGCACTTGCACTCAAGGAGAGGCACTATGTGCAAAGAAAATTGTCACCAAAGGGTAAGAAGAGTAAAGGGGAAAAGTTATCAGAGGGAACTAGTGTGTTGGAGCTAGAGGATTTGGGTGATGAATATCTTGAGCAACTTCTAAGTATGTCAGATCAAAGTGAAAGCCATAGCTACTCGATGTAA 531 0.4539 MVDFAASGAAKKTREGNNSERRKQPVKKSEGKEVQRSCIGVRKRPWGKFAAEIRDTTRNGARVWLGTFDNEEDAALAYDQAAFSMRGSNAVLNFPVKRVKESLQEMENDWGKGCSPALALKERHYVQRKLSPKGKKSKGEKLSEGTSVLELEDLGDEYLEQLLSMSDQSESHSYSM* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1866 176 MobiDBLite consensus disorder prediction 129 148 - -
Lja5g1866 176 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Lja5g1866 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 26 165 - -
Lja5g1866 176 ProSiteProfiles AP2/ERF domain profile. 37 95 IPR001471 GO:0003700|GO:0006355
Lja5g1866 176 SMART rav1_2 40 101 IPR001471 GO:0003700|GO:0006355
Lja5g1866 176 MobiDBLite consensus disorder prediction 1 37 - -
Lja5g1866 176 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677
Lja5g1866 176 MobiDBLite consensus disorder prediction 14 37 - -
Lja5g1866 176 Pfam AP2 domain 39 87 IPR001471 GO:0003700|GO:0006355
Lja5g1866 176 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Lja5g1866 176 PRINTS Ethylene responsive element binding protein signature 77 97 IPR001471 GO:0003700|GO:0006355
Lja5g1866 176 PANTHER DNA-BINDING DOMAIN 26 165 IPR044808 GO:0003700|GO:0009873
Lja5g1866 176 CDD AP2 40 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1866 Lja-Chr5 22489079 22489771 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1866 18 169 AP2-EREBP Transcription Factor Family AT3G23240 51.282 4.85e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja5g1866 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1866 K14516 - gmx:100782036 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1866 5 22489079 22489771 Lja5g1866 5 22489079 22489771 ECH