Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1865 ATGATGTTCGAATCATCTTATAGCAATAATCATATTGAAATTGATGATCCTGTTCATGATTTTCTTTCCTTCGATATGGTTGATTTCTCAACATTTTCACAGGCACCAACAGAAGAAAACAACAACGAGCGAAAGCAATTGAAGACGAAGACTGAAGCTAAGCAGAGAAATATGGAAAGGCCATATATAGGTGTGAGGAAAAGGCCATGGGGGAAATATGCTGCTGAAATCAGAGATACAACGCGGAACGGGACGAGGGTCTGGCTCGGAACATTTGAAAGTGCTATGGATGCTGCTTTGGCTTATGATCAAGCTGCATTTTCAATGAGAGGTTCCAATGCTGTTCTCAATTTTTCGGTTCGAAAAGGTGAAAGAGTCTTTGCAAGAGATGGAATATGA 399 0.4035 MMFESSYSNNHIEIDDPVHDFLSFDMVDFSTFSQAPTEENNNERKQLKTKTEAKQRNMERPYIGVRKRPWGKYAAEIRDTTRNGTRVWLGTFESAMDAALAYDQAAFSMRGSNAVLNFSVRKGERVFARDGI* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1865 132 PANTHER DNA-BINDING DOMAIN 25 121 IPR044808 GO:0003700|GO:0009873
Lja5g1865 132 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 25 121 - -
Lja5g1865 132 MobiDBLite consensus disorder prediction 41 61 - -
Lja5g1865 132 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
Lja5g1865 132 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
Lja5g1865 132 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Lja5g1865 132 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Lja5g1865 132 Gene3D AP2/ERF domain 61 121 IPR036955 GO:0003700|GO:0006355
Lja5g1865 132 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677
Lja5g1865 132 MobiDBLite consensus disorder prediction 33 61 - -
Lja5g1865 132 Pfam AP2 domain 62 111 IPR001471 GO:0003700|GO:0006355
Lja5g1865 132 CDD AP2 62 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1865 Lja-Chr5 22476837 22477235 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1865 56 122 AP2-EREBP Transcription Factor Family AT3G23240 76.119 7.08e-33 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja5g1865 AP2 6.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1865 K14516 - gmx:100811486 155.221