Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1864 ATGATGTTCGAATCATCTTTTAGAAATAATCATATTGAATTTGATGATCCTGTTCATGATTTTCTTTCCTTCGATATGGTTGATTTCTCCACATTTTCACAGGCACCAACAGAAGAAAACAACAACGAGCGAAAACAATTGGCGCAGAAGAATATTGAAGCTAATCAGAGAAATAAGGAAAGGCCATATATAGGTGTGAGGAAAAGGCCATGGGGGAAATATGCTGCTGAAATCAGAGATACAACGCGGAATGGGACGAGGGTCTGGCTCGGAACATTTGAAAGTGCTAAGGATGCTGCTTTGGCTTATGATCAAGCTGCATTTTCCATGAGAGGTAGCAATGCTGTTCTCAATTTTTCGGTGGAAAAGGTGAAAGAATCTTTGCAAGAGATGGAATATGATTGTGACAAAGGGTGTTCACCTGCACTTGCACTCAAGGAGCTGAACTGCACCAAAAGAAAACTGTCATCTAAAGCTCAATTGAGTCAAGGGGTAAAGGAATCTGCAGAGCCTCAAAATGTGTTGGTGTTACAGGACTTGGGAGTTGAATATCTTGAGCAACTTCTAGACATATCTGATCAAACTGCAAGTCCTAGCTACTCAAAGTAA 609 0.4056 MMFESSFRNNHIEFDDPVHDFLSFDMVDFSTFSQAPTEENNNERKQLAQKNIEANQRNKERPYIGVRKRPWGKYAAEIRDTTRNGTRVWLGTFESAKDAALAYDQAAFSMRGSNAVLNFSVEKVKESLQEMEYDCDKGCSPALALKELNCTKRKLSSKAQLSQGVKESAEPQNVLVLQDLGVEYLEQLLDISDQTASPSYSK* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1864 202 SMART rav1_2 62 126 IPR001471 GO:0003700|GO:0006355
Lja5g1864 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 20 191 - -
Lja5g1864 202 Coils Coil 37 57 - -
Lja5g1864 202 CDD AP2 63 119 IPR001471 GO:0003700|GO:0006355
Lja5g1864 202 Pfam AP2 domain 63 112 IPR001471 GO:0003700|GO:0006355
Lja5g1864 202 PANTHER DNA-BINDING DOMAIN 20 191 IPR044808 GO:0003700|GO:0009873
Lja5g1864 202 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
Lja5g1864 202 SUPERFAMILY DNA-binding domain 63 121 IPR016177 GO:0003677
Lja5g1864 202 Gene3D AP2/ERF domain 62 122 IPR036955 GO:0003700|GO:0006355
Lja5g1864 202 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Lja5g1864 202 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1864 Lja-Chr5 22427830 22428438 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1864 54 197 AP2-EREBP Transcription Factor Family AT3G23240 55.862 3.17e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja5g1864 AP2 2.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1864 K14516 - gmx:100527364 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1864 5 22427830 22428438 Lja1g1042 1 10385367 10386038 PCT