Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1862 ATGGAGGCAGAGAGACCATCAGGTTCCAATGGAAACAACAATGGGGAGGTTCGTTACAGAGGGATTCGAAGGAGGCCGTGGGGGAAGTTCGCGGCGGAGATTCGCGACCCGACGAGGAAAGGGGCTAGGATATGGCTGGGGACATTTGACACTGCGGAGCAAGCTGCACGGGCTTATGATGCTGCTGCATTTCATTTTCGTGGTCACAGAGCAATTCTCAACTTCCCCAATGAGTACCAGGCTCCTCCTGATGCAGTGAACTCTTATTCTTTGCAAATGCCTCTCAGTGCTCCTTCTCATGCTTCCAATTCATCTTCTTCTTACTCTGGTGGTGATGGTAACAATGGCATTGTGAAAGCTGAACCTTCTGGAGAGATGCAATTTGGTGATGATCACAGTTTTGAGTTGGAGTACTTTGATAGTAAGTTGCTGGAAGATCTCCTTCAAGATGACAGATATGGGCACTAG 468 0.4872 MEAERPSGSNGNNNGEVRYRGIRRRPWGKFAAEIRDPTRKGARIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEYQAPPDAVNSYSLQMPLSAPSHASNSSSSYSGGDGNNGIVKAEPSGEMQFGDDHSFELEYFDSKLLEDLLQDDRYGH* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1862 155 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 11 115 - -
Lja5g1862 155 PANTHER DNA-BINDING DOMAIN 11 115 IPR044808 GO:0003700|GO:0009873
Lja5g1862 155 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Lja5g1862 155 MobiDBLite consensus disorder prediction 95 113 - -
Lja5g1862 155 Pfam AP2 domain 18 69 IPR001471 GO:0003700|GO:0006355
Lja5g1862 155 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Lja5g1862 155 MobiDBLite consensus disorder prediction 95 124 - -
Lja5g1862 155 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Lja5g1862 155 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Lja5g1862 155 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Lja5g1862 155 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Lja5g1862 155 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1862 Lja-Chr5 22296197 22296868 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1862 13 148 AP2-EREBP Transcription Factor Family AT3G23230 51.471 3.39e-38 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja5g1862 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1862 - - gmx:100779173 181.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1862 5 22296197 22296868 Lja5g1862 5 22296197 22296868 ECH