Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1861 ATGGATTTTGATTCTTCTTTCTTTCAACACCAAAACCTTAACTCCTCCTTTTCAAATCCTTCTTTTTCTTCTGAATCTTTCTCTTGGGAAGATTTCTTTTTCTTCAATGAAGACAACAACACACTTCTTCCCTTCATTGAATCATCTTCGGATTCCAATACTTCAGGATCTCAGCTTAGCCTCACTGAATCATCATCATCATCAACACAAGAAGTCTCGTCCAATTCAACTCAAACCGAACAAGTCAAATTAGAACCACACACATCATCATCACCGCCGCCGCCGCCATCACCGCCGCCTAAGGAGGAAATTACGAAGAGGCCATTCAGGGGAGTGAGGAGAAGGCCATGGGGGAAATTCGCAGCCGAAATAAGAGACTCCACGAGAAACGGTGTTCGAGTGTGGATTGGCACGTTCGACACGGCTGAAGCAGCGGCTCTAGCTTATGACCAAGCGGCTTTGTCCACGAGAGGTTCCATGGCAGTGCTGAATTTCCCCGAGGAAGTGGTGAGGGAGTCACTGCAAGACATGGCTAACAAGCCTTGCGAAGATGGTTCCTCTCCTGTGTTGGCACTCAAGAGAAACCACACCATGAGAAGAAAGTCCAAGTCCAATAAGGCAACAAGTCACAAAAGGGCTAAAAGGGAAGAAACAATGCAGTTGGAGATTAATCTCTCCACAAATGTTATAGTTTTGGAGGATTTGGGTTCTGAATATCTTGACCAACTCTTGAGCTTGACTTCTTCTCAAGAAATCCCATTTGGTAGCTAG 771 0.4527 MDFDSSFFQHQNLNSSFSNPSFSSESFSWEDFFFFNEDNNTLLPFIESSSDSNTSGSQLSLTESSSSSTQEVSSNSTQTEQVKLEPHTSSSPPPPPSPPPKEEITKRPFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEEVVRESLQDMANKPCEDGSSPVLALKRNHTMRRKSKSNKATSHKRAKREETMQLEINLSTNVIVLEDLGSEYLDQLLSLTSSQEIPFGS* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1861 256 SMART rav1_2 108 172 IPR001471 GO:0003700|GO:0006355
Lja5g1861 256 ProSiteProfiles AP2/ERF domain profile. 108 166 IPR001471 GO:0003700|GO:0006355
Lja5g1861 256 SUPERFAMILY DNA-binding domain 109 167 IPR016177 GO:0003677
Lja5g1861 256 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Lja5g1861 256 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Lja5g1861 256 Gene3D AP2/ERF domain 108 168 IPR036955 GO:0003700|GO:0006355
Lja5g1861 256 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Lja5g1861 256 MobiDBLite consensus disorder prediction 46 112 - -
Lja5g1861 256 MobiDBLite consensus disorder prediction 46 87 - -
Lja5g1861 256 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 248 - -
Lja5g1861 256 MobiDBLite consensus disorder prediction 88 102 - -
Lja5g1861 256 CDD AP2 109 167 IPR001471 GO:0003700|GO:0006355
Lja5g1861 256 PANTHER DNA-BINDING DOMAIN 4 248 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1861 Lja-Chr5 22265011 22265856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1861 106 244 AP2-EREBP Transcription Factor Family AT2G31230 51.250 2.83e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja5g1861 AP2 2.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1861 K14516 - gmx:100784784 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1861 5 22265011 22265856 Lja5g1861 5 22265011 22265856 ECH
Lja1g1041 1 10366474 10367470 Lja5g1861 5 22265011 22265856 PCT