Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1857 ATGGCGATAGCTCGTTGCTCCGATAAAATGGAGTTGAAGAAAGGACTATGGACGCGAGAGGAAGATCTCATCCTCATCAACCATATCCAAAGACATGGTCACACAAATTGGCGTGTTGTGCCTCAACAAGCTGGGTTGTTGAGGGGTGGAAAGAGTTGCAGACTCCGGTGGGTCAATTATTTGAGGCCAGATATCAAACGGGGTAATTTCACCCGTGAAGAAGAGGAAACCATCATCAAATTGCATGAGATGTGGGGAAACAGATGGTCAGCTATTGCAGCAAAATTACCAGGACGCACAGATAACGAGATAAAGAATGTGTGGCACGCCTACTTGAAGAAGAGGCTGCCACCACAACACACACAGTCGAAGCAGAGCCAAAATAGAGAACAAAATGCAGACCAAAGTATGGAGTCCCAAAAATTTGACAACCAAGAGCCAACACAGAAGGAACAACAACAACAACAACCTGTGATGAATTTCAATTTCTCCACTCATCATGATCATGTGATCAAAGTTGCAGGCAGAGATGAAATGCCATTGCCATTGACACAACCATTGTCATTGCCAACATCTTCTAAACAGGACTCGAACATGGACATGTCTATCTTCACCATTAGTGATAGCAACAACGAGCGGAACAATAACTTAATTGTTGCTAATAATAATAATGTTAATAAGGATCATGACATGTTGATGAATAACAATGTTGAACCTCAGGGTGATGAATTTTGGTCTGAATTTCTATCAGGTGATGAGGGTAATCCCGACATTGGTGTTACTGACCTGAATTTCCAGTCTCCATTCTCTCCAATATCCAGTTTCCATAACATGGACTTTTGGGAAATGTTTAAATAA 858 0.4184 MAIARCSDKMELKKGLWTREEDLILINHIQRHGHTNWRVVPQQAGLLRGGKSCRLRWVNYLRPDIKRGNFTREEEETIIKLHEMWGNRWSAIAAKLPGRTDNEIKNVWHAYLKKRLPPQHTQSKQSQNREQNADQSMESQKFDNQEPTQKEQQQQQPVMNFNFSTHHDHVIKVAGRDEMPLPLTQPLSLPTSSKQDSNMDMSIFTISDSNNERNNNLIVANNNNVNKDHDMLMNNNVEPQGDEFWSEFLSGDEGNPDIGVTDLNFQSPFSPISSFHNMDFWEMFK* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1857 285 SMART sant 66 114 IPR001005 -
Lja5g1857 285 SMART sant 13 63 IPR001005 -
Lja5g1857 285 CDD SANT 69 112 IPR001005 -
Lja5g1857 285 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 231 - -
Lja5g1857 285 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja5g1857 285 MobiDBLite consensus disorder prediction 115 155 - -
Lja5g1857 285 MobiDBLite consensus disorder prediction 118 155 - -
Lja5g1857 285 Gene3D - 13 66 - -
Lja5g1857 285 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja5g1857 285 CDD SANT 17 61 IPR001005 -
Lja5g1857 285 Gene3D - 68 158 - -
Lja5g1857 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja5g1857 285 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja5g1857 285 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja5g1857 285 PANTHER MYB-RELATED PROTEIN 4 231 - -
Lja5g1857 285 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja5g1857 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1857 Lja-Chr5 22047369 22048775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1857 1 116 MYB Transcription Factor Family AT2G31180 74.138 1.07e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja5g1857 Myb_DNA-binding 6.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1857 K09422 - gmx:100775603 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1857 5 22047369 22048775 Lja1g1036 1 10311846 10313991 PCT