Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1851 ATGCCGTCGCTACTCTCGCCGGGGAAAATCCACCGGCTAGAAATGGAGAATTTCAAATCCTACAAAGGCTTCCAAGTTATCGGTCCCTTCTACGACTTCACCGCCATCATCGGCCCCAACGGCGCCGGAAAATCCAACCTCATGGACGCCATAAGCTTCGTTCTCGGCGTCAGAACCGGCCAGCTCCGCGGCGCGCAACTCAAGGACCTCATCTACGCCTTCGACGACAGGGAGAAGGAGCAGAGAGGACGCAGAGCCTTCGTCCGCTTGGTCTACCAGCTCGCTAACAACTCCGAGATCCAGTTCACCCGAACCATCACCTCCGCCGGCGCTAGCGAGTACCGCATCGACGGTAACCTTGTCAACTGGGATATCTACAACGCCAAGCTCAAATCACTCGGTATTCTTGTCAAGGCTCGCAATTTCCTCGTCTTTCAGGGTGATGTTGAATCTATTGCGTCGAAGAATCCGAAAGAGCTAACCGGCCTTATCGAGCAGATATCTGGCTCTGACGAGCTCAAGAGGGACTATGAGCAGTTTGAAGAAGAAAAAGGCGCTGCTGAGGAGAAATCGGCGCTTATTTACCAGAAGAAGAAGACGGTGGTTATGGAGAGGAAGCAGAAGAAGGAACAGAAGGAGGAGGCAGAGAAACATCTCCGCCTGCAGGAGCAGCTGAAATCTGTGAAGAAGGAACATTTCTTGTGGCAGTTGTTCAATATAGAAAATGATATTACGAAAACAACTGAGGATCTTGAAGATGAGACCAAAAGTCGTCTAGCTGTTATTGAAGAGCTGGGAAATTTTGAAAATGAAGCAAGTAAAAAGAAAAAAGAGCAGGCCAAATATCTTAAAGAAATTGCGCTACGTGAAAAGAAAATTACTGAGAAAAGCAACAAACTTGACAAGAGTCAACCTGAGCTTCTGAAGTTAAAGGAGGAAATGACTCGTATCAATTCAAAAATAAAAAAAGGGAAGAAGGAACTTGATAAAAAAAGGGAAGAACGGAGGAGGCATGCTGCTGATATAGCGGAGCTACAAAGGGGGATCCAGGATCTTGCAGCGAAAATGGCAGACTTACAGGAAAAGAGTCGAGGTGTTGGCAATGAGCTTGAGTTAGATGGCGATGACTTGGAAGAATATTTTAGAATCAAAGAGGAAGCTGGGATGAAAACTGCAAAGCTTAGGGAGGAAAAAGAGCTTCTAGATAGGCAGCAACATGCTGATAGTGAAGCTCAAAAAAATTCGGAAGAAAATCTTCAACAGTTACGAAACAGGGAGTCTGAATTGAATTCACAGGAAGAACAGATGCAGGCAAGGCTTAAAAAAATTGTTGATAGTTCTGCAAAAAATAAGGATGGACTTGCAAACTTGAAGAAAGAGCTGCGTGTGATGCAGGACAAACATCGTGATTCCAAGAAAAAATATGAAAATTTGAAGTTGAAAATCGGTGAATTAGAAAATCAACTACGTGAACTAAAGGCTGATAGACATGAAAATGAGCGAGATGCTAAACTATCTCAGGCTGTGGAGACTCTGAAACGCCTGTTTCAAGGAGTCCATGGTCGCATAACTGAACTTTGTAGGCCAACACAGAAGAAGTATAACCTAGCCGTTACTGTTGCTATGGGTAAATTTATGGATGCAGTTGTAGTTGAGGATGAAAAGACTGGGAAGGAATGCATCAAGTATTTAAAAGACCAGAGGCTTCCTCCGCAGACATTTATTCCTCTGCAATCTATTCGTGTGAAGCCAATAATGGAAAGATTGCGGGCATTAGGGGGTACAGCAAAACTGGTTTTTGATTTTGATCCCTCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAATACTCTTGTTTGTGATGGTCTTGATGAGGCCAAAGATTTAAGCTGGAAAGGCGAGAGATTTAAAGTTGTAACTGTGGATGGAATTCTGCTTACAAAATCCGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAAGCAAGGTCAAATAAGTGGGATGACAAGAAAATTGAAGGACTTAATAAAAAGAAAGAGCAGTATGAATCAGAGTTAGATGAGCTAGGATCAATCAGAGATATGCACCTTAAAGAGTCTGAAGCATCTGGAAAAATTAGTGGACTGGAGAAGAAAATTCAATATGCTGAGATTGAAAAGCGAAGCATTGAAGACAAACTTTCAAATTTGAACCAAGAAAAAGAGACCATGAAAAAACAAATTGAACGTATCACTCCAGACCTCCAGAAGTTAAATGGCACTGTTGACAAAAGGAATGCAGAATTGCGTAAGCTTGAGAAGAGAATTAATGAAATCACTGATCGGATATACAAAGACTTTAGCAAGTCAGTTGGGGTTTCAAACATCCGTGAGTATGAAGAAAATCGACTCAAGGATGCTCAAAATGTAGCAGAGGAGAGGCTGAACCTGAGTAGCCAACTTTCAAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGTGACATGAGTTCACGAATTCAAGAACTGGAATATTCTCTTAGTGCTTTAGAGAATGACTTAAAACGGGTACAAAACAAAGAGGCTGAAGCAAAGTTAGCAGCTGAGAATGCTACTGAAGAGATTGATCAGTTTAAGGATGAAGTTAAAGAGTGGAGATCAAAGTCAGAGGATTGTGAAAAGGAAATCCAAGAATGGAAGAAGAAGGCTTCTTTATCCACAACAAACTTATCCAAACTTAATCGTCTGATAAACTCCAAGGAGACACAGATTGATCAGTTGGTGGTGCAAAAGCAGGAAATATTAGAGAAGTGTGAACTGGAGCAGATTAGCCTTCCGACCATATCAGATTCTATGGATACTGGTAGCTCCACACCAGGTCCAGTTTTTGACTTTGATCAGCTCAGTAGGCCACTGAAAGATAGGAGACCCTCTGACAGGGATAAAATTGAGGTAGAATTTAAGCAAAAAATGGGTACGCTAATATCTGAGATTGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAGTATGAGGCTCTGCTAGAAAAAGAAAGAGGTGTATTGGAAGAGTTTGAAGCTGTCAGGAAAGAGGAGAAGGAAAAAGCGGATAGATTCAATGCTGTTAAACAGAGGAGGTATGAGTTGTTCATGGATGCTTTCAACCATATATCTGGTAATATAGATAAAATTTACAAACAGCTTACAAAGAGCCACACACATCCTCTGGGTGGAACAGCATACCTAAATTTGGAAAATGAAGATGATCCATTTCTACATGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGCTTCCGTGATATGGATCAGCTATCTGGTGGGGAAAAGACTGTTGCTGCACTTGCGTTGCTATTCTCCATCCACAGCTATAAGCCGTCGCCGTTTTTTATATTGGATGAAGTTGATGCTGCATTGGACAACTTGAATGTCGCTAAGGTTGCTGGCTTTATTCGTTCAAAATCTTGTGAAGGAAGGGCTAGCCAGGATACTGATGGTGGAAGTGGTTTTCAAAGTATTGTGATTTCACTGAAAGACAGCTTTTATGACAAAGCTGAGGCGCTAGTTGGGGTCTACAGGGATTCTGATGGAGGTTGTTCGAAAACTCTCACGTTTGATCTAACTAACTATCGGGAGTCCTGA 3642 0.4245 MPSLLSPGKIHRLEMENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDREKEQRGRRAFVRLVYQLANNSEIQFTRTITSAGASEYRIDGNLVNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQFEEEKGAAEEKSALIYQKKKTVVMERKQKKEQKEEAEKHLRLQEQLKSVKKEHFLWQLFNIENDITKTTEDLEDETKSRLAVIEELGNFENEASKKKKEQAKYLKEIALREKKITEKSNKLDKSQPELLKLKEEMTRINSKIKKGKKELDKKREERRRHAADIAELQRGIQDLAAKMADLQEKSRGVGNELELDGDDLEEYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQKNSEENLQQLRNRESELNSQEEQMQARLKKIVDSSAKNKDGLANLKKELRVMQDKHRDSKKKYENLKLKIGELENQLRELKADRHENERDAKLSQAVETLKRLFQGVHGRITELCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSIRVKPIMERLRALGGTAKLVFDFDPSLEKAILFAVGNTLVCDGLDEAKDLSWKGERFKVVTVDGILLTKSGTMTGGTSGGMEARSNKWDDKKIEGLNKKKEQYESELDELGSIRDMHLKESEASGKISGLEKKIQYAEIEKRSIEDKLSNLNQEKETMKKQIERITPDLQKLNGTVDKRNAELRKLEKRINEITDRIYKDFSKSVGVSNIREYEENRLKDAQNVAEERLNLSSQLSKLKYQLEYEQNRDMSSRIQELEYSLSALENDLKRVQNKEAEAKLAAENATEEIDQFKDEVKEWRSKSEDCEKEIQEWKKKASLSTTNLSKLNRLINSKETQIDQLVVQKQEILEKCELEQISLPTISDSMDTGSSTPGPVFDFDQLSRPLKDRRPSDRDKIEVEFKQKMGTLISEIERTAPNLKALDQYEALLEKERGVLEEFEAVRKEEKEKADRFNAVKQRRYELFMDAFNHISGNIDKIYKQLTKSHTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMDQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGRASQDTDGGSGFQSIVISLKDSFYDKAEALVGVYRDSDGGCSKTLTFDLTNYRES* 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1851 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 852 1206 IPR027417 -
Lja5g1851 1213 Coils Coil 307 369 - -
Lja5g1851 1213 Coils Coil 170 190 - -
Lja5g1851 1213 Pfam RecF/RecN/SMC N terminal domain 10 1196 IPR003395 -
Lja5g1851 1213 Pfam SMC proteins Flexible Hinge Domain 517 629 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lja5g1851 1213 Gene3D - 494 577 - -
Lja5g1851 1213 Gene3D - 578 657 - -
Lja5g1851 1213 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 1212 - -
Lja5g1851 1213 Coils Coil 1001 1035 - -
Lja5g1851 1213 Coils Coil 903 930 - -
Lja5g1851 1213 MobiDBLite consensus disorder prediction 941 973 - -
Lja5g1851 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 266 IPR027417 -
Lja5g1851 1213 Coils Coil 826 895 - -
Lja5g1851 1213 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 9 1212 - -
Lja5g1851 1213 PIRSF SMC 8 1211 IPR024704 GO:0005524|GO:0016887
Lja5g1851 1213 CDD ABC_SMC1_euk 1093 1207 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Lja5g1851 1213 SUPERFAMILY Tropomyosin 695 919 - -
Lja5g1851 1213 SMART SMC_hinge_2 517 630 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lja5g1851 1213 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Lja5g1851 1213 Coils Coil 748 775 - -
Lja5g1851 1213 Coils Coil 672 692 - -
Lja5g1851 1213 MobiDBLite consensus disorder prediction 941 956 - -
Lja5g1851 1213 Coils Coil 706 743 - -
Lja5g1851 1213 SUPERFAMILY Smc hinge domain 481 679 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lja5g1851 1213 Coils Coil 454 502 - -
Lja5g1851 1213 Coils Coil 412 439 - -
Lja5g1851 1213 Coils Coil 198 231 - -
Lja5g1851 1213 Gene3D - 836 1212 IPR027417 -
Lja5g1851 1213 Gene3D - 8 229 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1851 Lja-Chr5 21943176 21955250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1851 6 92 Structural Maintenance of Chromosomes family AT5G07660 36.170 6.88e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1851 K06636 - gmx:100791953 1975.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1851 5 21943176 21955250 Lja5g1851 5 21943176 21955250 ECH