Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1848 ATGCAAATAGGTCAAACGGATACAGCATCAGTGAGATGTCTTGTCAACAGCATTTCTCGATTCATTCACCTGGTTTCTTGCCAAACAGTGAAATCTGTGCCCTTTCAGAAGATCTGTAATAATATGGTTGGGGTATTAAAGCGCTTGAAGCCGGTGCTTGATGACGTTACAGATTACAAAATTTCTTTAGATGAAAATCTATGTAAAGCGTGTGAACAATTGGATTTACGGGTTAATGAAGCTAGAGATGTCATAGAAAAATGGGGTCCAAAAATGAGCAAGATTCACAGTGTTTTGCAAAGTGGGACATTGTTGATCAAGTTGCAGAGCACTTCACTTGATATTTGTCACATGATAGTTAGATCCTTACCATCACCACCATCTGCATCAGTTTTGGCTAATCTTCAGCTCTATATCCAGGAAGTTCAGTGTCTCAAGAAGGAAACAGCAATGGTCTATATAGAAGAAGCGCTAAGAAAACAAAGAGATAATATGGAACCTTGCCGTGAACATCTAAAACAAATTATTGAGTTACTTAACTTGACTTCAGACCAGGAGCTTTTGAAAGAATGTATTGCTGTGGAAAAGGAAAGGTTGAACGCTGAAGTCAATAAAATGAAAGGGGACATGGTAGAAATTAATGAAATCGTAAATCTTGTCCGCAATGTATGTGATTATGTCATGACAACTGAGTGCCCTGTAATCAAGAGTGGTGTCTCAGTCCCTTCATACTTCCGCTGTCCATTATCTTCGGAACTCATGCTGGATCCTGTTATTGTGGCTTCAGGTCAAACATATGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTAACTGTTTGTCCCAGGACTCGTCAGACACTTGCTCATTCAATTCTTACTCCCAATTATACTGTCAAAGCTATGATAGCGAAGTGGTGCGAGGAAAATAATATCAAACTTTTCTCTAACTCTGAGCATAATAATTCTGCCCGTATCACATCCCCCTCAAATTGTTTATTGCCTCAAGATGGTTTTGGCTCTTCACCAAGCAGCAATTCAATTTCAAGATCATCTCTTCAAACTGTAAATTCATTTGAGAAACAAAAGGGTGATAACTCTTTCAGATTACGTGGAGAATACAATGGATGCCAAAGGGAAACAACAGAAAAGTGTGAGCAACAATCCCCCTATATTCATAGTAGAAGTGATTCATTATCCAGTTCAATTTCTAGTACTGATTGTCTGCTTGCAGTTTCAAAAGACGTCTCAGGGATATCCAATAAGCTTCAGAATGTGTATGTATTGTCTGGAGAAATCATAAATGTGTGTCATGCTTCTCCTGGCCAAAAACAATCAGGGATATCTCCTTGGTTATCTGGAAAGCAATTTGAAATCCCTGGATCAAATGTAGGAGCACGGGAGAATGGAAATAATTATAATAGTAATACCAATGATAGTCGCGCAAGAGTTGATTCCCATCCTGTTTTGAATTCAGGATCAGATGAATTAACCACCTCATCTCATGTCAATAAATTGATTGAAGAACTTCACAGCCAATCAATTGAAGCACAAACTACTGCTGCAGAAGAATTGAGGCTCCTTACAAAGAATAACATGGAAAATCGTATCATTGTAGGGAAGTGTGGGGCTGTAACGCCATTAATTTCTCTGCTATATTCAGACGTGAAGATAATACAAGTACATGCTGTGACAGCTCTGCTGAATTTGTCAATTAGTGAAGACAACAAGGCCTTGATTATGGAGGCAGGAGCCATAGAACCTCTTATCCATGTTTTGAAGACAGGAAATGATGGAGCCAAGGAAAATTCTGCGGCAGCTCTATTCAGCCTCTCTGTAATGGAGAACAATAAGGCAAAAATTGGCCGTTCTGGTGCAGTTAAAGCTTTGGTGGATCTTCTCGCCTCAGGAACTCTCAGAGGAAAGAAGGATGCTGCTACTGCTTTATTTAACCTTTCAATATTTCACGAGAATAAAGCTCGCATAGTTCAAGCTGGAGCTGTGAAATTTCTGGTCCAGTTAATGAATACTGCTGATGGAATGGTGGACAAGGCTGTGGCACTTCTGTCAAACCTGTCAACAATAACCGAGGGCCGATCAGAAATTGCTAGGGAAGGTGGCATCCCCTTACTAGTTGAGATTATTGAATCAGGTTCTCAGAGAGGAAAGGAAAATGCTGCCTCCATTCTCTTGCAATTATGCCTTCATAGTTCCAAGTTCTGTACTCTAGTTTTGCAAGAAGGAGCTGTACCTCCGTTAGTTGCGTTATCTCAATCTGGTACACCAAGGGCAAAGGAAAAGGCACAACAGCTTCTCAGTCATTTTCGTAATCAGCGGGAAGGAGCTACTGGGAAGGGAAAAACATGA 2370 0.4034 MQIGQTDTASVRCLVNSISRFIHLVSCQTVKSVPFQKICNNMVGVLKRLKPVLDDVTDYKISLDENLCKACEQLDLRVNEARDVIEKWGPKMSKIHSVLQSGTLLIKLQSTSLDICHMIVRSLPSPPSASVLANLQLYIQEVQCLKKETAMVYIEEALRKQRDNMEPCREHLKQIIELLNLTSDQELLKECIAVEKERLNAEVNKMKGDMVEINEIVNLVRNVCDYVMTTECPVIKSGVSVPSYFRCPLSSELMLDPVIVASGQTYERQSIQKWLDHGLTVCPRTRQTLAHSILTPNYTVKAMIAKWCEENNIKLFSNSEHNNSARITSPSNCLLPQDGFGSSPSSNSISRSSLQTVNSFEKQKGDNSFRLRGEYNGCQRETTEKCEQQSPYIHSRSDSLSSSISSTDCLLAVSKDVSGISNKLQNVYVLSGEIINVCHASPGQKQSGISPWLSGKQFEIPGSNVGARENGNNYNSNTNDSRARVDSHPVLNSGSDELTTSSHVNKLIEELHSQSIEAQTTAAEELRLLTKNNMENRIIVGKCGAVTPLISLLYSDVKIIQVHAVTALLNLSISEDNKALIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVMENNKAKIGRSGAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVQLMNTADGMVDKAVALLSNLSTITEGRSEIAREGGIPLLVEIIESGSQRGKENAASILLQLCLHSSKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGATGKGKT* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1848 789 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Lja5g1848 789 MobiDBLite consensus disorder prediction 765 789 - -
Lja5g1848 789 PANTHER U BOX DOMAIN-CONTAINING 11 784 - -
Lja5g1848 789 MobiDBLite consensus disorder prediction 466 485 - -
Lja5g1848 789 MobiDBLite consensus disorder prediction 463 485 - -
Lja5g1848 789 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 544 586 IPR000225 GO:0005515
Lja5g1848 789 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Lja5g1848 789 Coils Coil 196 216 - -
Lja5g1848 789 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 585 627 IPR000225 GO:0005515
Lja5g1848 789 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 626 668 IPR000225 GO:0005515
Lja5g1848 789 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Lja5g1848 789 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 784 - -
Lja5g1848 789 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Lja5g1848 789 Pfam Armadillo/beta-catenin-like repeat 618 654 IPR000225 GO:0005515
Lja5g1848 789 Pfam Armadillo/beta-catenin-like repeat 535 572 IPR000225 GO:0005515
Lja5g1848 789 Pfam Armadillo/beta-catenin-like repeat 575 613 IPR000225 GO:0005515
Lja5g1848 789 SUPERFAMILY RING/U-box 239 315 - -
Lja5g1848 789 SUPERFAMILY ARM repeat 498 776 IPR016024 -
Lja5g1848 789 SMART arm_5 696 736 IPR000225 GO:0005515
Lja5g1848 789 SMART arm_5 656 695 IPR000225 GO:0005515
Lja5g1848 789 SMART arm_5 574 614 IPR000225 GO:0005515
Lja5g1848 789 SMART arm_5 533 573 IPR000225 GO:0005515
Lja5g1848 789 SMART arm_5 615 655 IPR000225 GO:0005515
Lja5g1848 789 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 667 708 IPR000225 GO:0005515
Lja5g1848 789 Gene3D - 489 783 IPR011989 -
Lja5g1848 789 CDD RING-Ubox_PUB 245 287 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1848 Lja-Chr5 21892604 21897551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1848 7 789 U-box Gene Family AT3G54790 51.259 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1848 - - gmx:100800949 1202.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1848 5 21892604 21897551 Lja5g1848 5 21892604 21897551 ECH