Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1844 ATGTTAAAGGCAGTGGTGTATGGTCTTTGGATTACCTCTATCCTCATATGTGTATCTGCAACTGATAGTGGGTTTTCTAGATGTAACTGTGATGATGAGGCCAGTTTGTGGAGTATTGAGAGTATTCTGGAGTGTCAGAGAGTTGGGGATTTCTTGATTGCTGTGGCCTACTTCTCCATCCCTATTGAGCTGCTTTATTTTATCAGTTGCTCAAATGTTCCCTTCAAATGGGTCCTTGTTCAGTTCATTGCCTTCATTGTGCTGTGTGGATTGACCCATTTGCTGAATGGGTGGACCTATGGCCCTCACACTTTTCAACTCATGGTGGCACTCACTGTGTTTAAAATTCTCACTGCTTTGGTGTCTTGTGCCACTGCTATAACTCTGATCACTTTGATTCCTTTGCTTCTCAAAGTGAAGGTTAGAGAGTTCATGCTGAAGAAAAAGACCTGGGATCTTGGCCGGGAGGTTGGTATTATTATGAAGCAAAAGGAGGCTGCAATGCATGTGAGAATGCTTACTCAGGAGATTCGCAAGTCGCTTAATCGACATACGATTTTGTACACCACTTTGGTGGAGCTGTCTAAAACATTGGGCTTGCAGAATTGTGCTGTGTGGATGCCTAATGTTGAGAGGACAGAGATGAACCTCACTCATGAATTGAATGAAAGGAATTTCAATTTTTCTATACCCATTACTGATCCAGATGTTGTGAATATTAAGGGAAGTGATGATGTGAATGTACTTGGCCCTGAGTCAGCACTGGCTGTTGCTAGTTGTGGAGTTTCTGGTGGGGCAGGACCAGTTGCTGCAATCCGAATGCCGATGCTACGGGTTTGTAATTTCAAAGGGGGAACGCCTGAGCTAAGGCAATTATGTTATGCGATATTGGTCTTGATTCTTCCTGTTGGAGAGCCTAGATCTTGGAGCAATCAGGAGCTGGAGATAATTAAAGTGGTTGCTGATCAGGTTGCGGTGGCTCTATCTCATGCCGCAATCCTTGAAGAGTCCCAGCTTATGAGAGAGAAGTTGGAAGAGCAAAATCGAGCTTTGCAGCAGGCGAAAAGGAATGCTATGATGGCAAGCCAGGCAAGGAATGCGTTTCAGAAAGTCATGAGTGATGGAATGAGGAGGCCAATGCACTCAATTTTGGGATTGCTTTCGATGATAAAAGACGATAATTTTAACGATGAACAGAAACTCATTGTTGACGCCATGCTAAGGACCAGCAATGTGCTATCAAACTTGATAAATGATGCCATGGACAATTCTGCAAAAGATGATGGGAGGTTTCCTCTAGAGATAAGGTCTTTTGGGCTACATTCCATGATAAAGGAAGCAGCTTGTGTTACCAAGTGCATGTGTGTCTATAGGGGCTTCGGTTTTATGGCGGAGGTTGATAAGTCTCTACCTGACAATGTTATGGGTGATGAGAGGAGGGTTTTTCAGGTGATTTTGCATATGGTTGGGAACCTACTCCATCCCAACCATGGGGGATCTCTTGTATTTCGGGTTTTTGCAGAAACTGGAAGTAATGGAAGGAATGACAAAGGGTGGGCAACCTGGAGACCAAGCTCATCTAGTGGTGATGTAAATATTAGATTTGAGTTAGGGATCAACAGTAGTGATTCTGAAGTTGGGAGCTCAGTTTCTTCAGTACTTGTGGCTAGGAAATATACCAGTGATAGAGTTGATGGCAGATTGAGCTTCAGTATTTGCCAGAGGATAGTCCAGTTGATGCAAGGGAACATATGGTTGGTACCATATGCTCATGGTTTTCCTCAAAGCATGTCACTCCTCCTTCGGTTTCAATTACGGCCGTCCATTGCCATAGCCATCTCTGAACCTGGAGAGTCTTCAGAACGTACCGGTTCCAATTCAATGTTGAGCGGGCTGCAAGTTCTGTTAGTTGACAATGATGATGTAAATAGAGCAGTGACCCAAAGATTGCTTCAGAAACTAGGTTGTGTGGTAACTTCTGTTTCTTCAGGACTTGAGTGCCTTACTTTCATTGGACATGCTGGATCTCCCATTCAAGTCATTCTTTTGAATCTTCAAATGGATGATTTAGAAGGCTTTGAAGTCGCCACAAGGATTCGGAAATTTAGAAGCCGAAATTGGCCTGTGATTGTTGCCTTGACTTCGAGTGCAGAAGAAGATTTGTGGGAAAGATGCATGCAAAGTGGTATTAGCGGAGTTATCCGAAAACCGGTTTTGTTGCAAGGCATTGCTGGTGAACTCAGAAGAATCCTGATGCAGGGAAATAATGTGCTGTGA 2277 0.4374 MLKAVVYGLWITSILICVSATDSGFSRCNCDDEASLWSIESILECQRVGDFLIAVAYFSIPIELLYFISCSNVPFKWVLVQFIAFIVLCGLTHLLNGWTYGPHTFQLMVALTVFKILTALVSCATAITLITLIPLLLKVKVREFMLKKKTWDLGREVGIIMKQKEAAMHVRMLTQEIRKSLNRHTILYTTLVELSKTLGLQNCAVWMPNVERTEMNLTHELNERNFNFSIPITDPDVVNIKGSDDVNVLGPESALAVASCGVSGGAGPVAAIRMPMLRVCNFKGGTPELRQLCYAILVLILPVGEPRSWSNQELEIIKVVADQVAVALSHAAILEESQLMREKLEEQNRALQQAKRNAMMASQARNAFQKVMSDGMRRPMHSILGLLSMIKDDNFNDEQKLIVDAMLRTSNVLSNLINDAMDNSAKDDGRFPLEIRSFGLHSMIKEAACVTKCMCVYRGFGFMAEVDKSLPDNVMGDERRVFQVILHMVGNLLHPNHGGSLVFRVFAETGSNGRNDKGWATWRPSSSSGDVNIRFELGINSSDSEVGSSVSSVLVARKYTSDRVDGRLSFSICQRIVQLMQGNIWLVPYAHGFPQSMSLLLRFQLRPSIAIAISEPGESSERTGSNSMLSGLQVLLVDNDDVNRAVTQRLLQKLGCVVTSVSSGLECLTFIGHAGSPIQVILLNLQMDDLEGFEVATRIRKFRSRNWPVIVALTSSAEEDLWERCMQSGISGVIRKPVLLQGIAGELRRILMQGNNVL* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1844 758 Pfam GAF domain 182 328 IPR003018 GO:0005515
Lja5g1844 758 SMART REC_2 632 751 IPR001789 GO:0000160
Lja5g1844 758 SMART gaf_1 182 338 IPR003018 GO:0005515
Lja5g1844 758 PIRSF Ethylen_sen_hybr_HK 1 758 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Lja5g1844 758 SUPERFAMILY CheY-like 629 751 IPR011006 -
Lja5g1844 758 SUPERFAMILY GAF domain-like 185 331 - -
Lja5g1844 758 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 349 429 IPR036097 GO:0000155|GO:0007165
Lja5g1844 758 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Lja5g1844 758 ProSiteProfiles Response regulatory domain profile. 633 751 IPR001789 GO:0000160
Lja5g1844 758 Coils Coil 334 364 - -
Lja5g1844 758 Pfam Response regulator receiver domain 634 738 IPR001789 GO:0000160
Lja5g1844 758 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 10 755 - -
Lja5g1844 758 Gene3D - 618 755 - -
Lja5g1844 758 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 433 589 IPR036890 -
Lja5g1844 758 CDD HATPase_ETR2_ERS2-EIN4-like 470 601 - -
Lja5g1844 758 Gene3D - 327 427 - -
Lja5g1844 758 SMART HisKA_10 364 429 IPR003661 GO:0000155|GO:0007165
Lja5g1844 758 Gene3D - 428 593 IPR036890 -
Lja5g1844 758 PANTHER ETHYLENE RESPONSE SENSOR 2 10 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1844 Lja-Chr5 21774160 21777160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1844 22 751 Miscellaneous Gene Families AT3G04580 57.661 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja5g1844 GAF 7.6e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1844 K14509 - gmx:100787425 1271.53