Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1841 ATGTCAACTCTGGCTAATCCTTGGTGGACAAGCCAGGGAGGGTTCTCTGGGGTTGACCCAGGAACCCATTCACCTGGCTTGAGCAAACGTCACACGGACCTTGTGATCAATGAAAACAGCAGCGGTGGTAATAGAGATGAAGATGAAGATGATAACAGGGAAGATGAGCCAAAAGAAGGTGCAGTTGAGGTTGGAACTCGGAGACCAAGGGGAAGACCACCGGGATCCAAGAACAAGCCAAGACCACCCATCTTTGTAACAAGGGACAGCCCAAACGCCCTGAGGAGTCATGTTATGGAGGTTGCAGGAGGAGCTGATGTCGCAGAAAGCGTGGCCCAGTTTGCGAGGAGGCGCCAGCGTGGGGTTTGTGTGATGAGCGGGAGTGGCTCTGTGGCAAACGTTACCCTGAGACAACCTGCGGCTCCGGGTGCTGTTGTAGCACTCCATGGCAGGTTTGAGATCTTATCCCTAACTGGGGCGTTCCTACCTGGCCCTGCTCCTCCAGGATCCACTGGTCTAACAGTGTATCTTTCTGGAGGACAGGGTCAGGTAGTGGGAGGGAGTGTGGTGGGGTCTCTAGTTGCAGCAGGACCAGTTATGGTCATTGCTGCAACTTTTGCTAATGCAACATATGAGAGGTTGCCACTTGATGATGATGATGAGGGACCTAGTGGGGCCGCTACGGCGGCAAGCGGAGGAGGAAGTGGATCGTCTCCTCCACCTGGAATTGGAATTGGCAGTGGTGGGGGTCATCAACTGCAGGCTGGACTGGTTCCAGATCCATCATCCATGCCGTTGTATAATCTGCCACCAAATCTGTTGTCCAATGGAGGAGGAGGACAAGTGGGGCATGATGCTCTTGCTTGGGCTCATGGAAGAACACCTTACTGA 891 0.5376 MSTLANPWWTSQGGFSGVDPGTHSPGLSKRHTDLVINENSSGGNRDEDEDDNREDEPKEGAVEVGTRRPRGRPPGSKNKPRPPIFVTRDSPNALRSHVMEVAGGADVAESVAQFARRRQRGVCVMSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGAFLPGPAPPGSTGLTVYLSGGQGQVVGGSVVGSLVAAGPVMVIAATFANATYERLPLDDDDEGPSGAATAASGGGSGSSPPPGIGIGSGGGHQLQAGLVPDPSSMPLYNLPPNLLSNGGGGQVGHDALAWAHGRTPY* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1841 296 PIRSF ESCAROLA 17 296 IPR014476 GO:0003680
Lja5g1841 296 CDD DUF296 95 177 IPR005175 -
Lja5g1841 296 MobiDBLite consensus disorder prediction 1 91 - -
Lja5g1841 296 MobiDBLite consensus disorder prediction 214 262 - -
Lja5g1841 296 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 218 - -
Lja5g1841 296 ProSiteProfiles PPC domain profile profile. 91 229 IPR005175 -
Lja5g1841 296 Gene3D - 94 221 - -
Lja5g1841 296 MobiDBLite consensus disorder prediction 1 18 - -
Lja5g1841 296 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 207 IPR005175 -
Lja5g1841 296 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 12 296 - -
Lja5g1841 296 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 12 296 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1841 Lja-Chr5 21703680 21706257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1841 4 296 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 60.067 5.00e-100 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1841 - - gmx:100798994 388.652