Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1828 ATGGATCTTGTAACCAGAAGATTCTTGATCCAACATGGGTCATCACAGTCACAAGCTCTTCCACCAATCACAAGTTCAGGGAGTTCAATCCTTCACCCTCATCTTCATTCTTCTAGCACCAGTTTTCCCATCATTGCTATTGCTATCATTGGAATCATGGCTACAGCTTTTTTGCTTGTGAGCTACTACATCTTTGTGATCAAATGTTGTCTCAATTGGCACCGCATTGATCTTCTGAGGCGTTTCTCTCCATCTAGGAGGCGTGAAGATCTAACTGCAATGTACTCACCAGGAACAGAACCTCGTGGATTGGATGATGCAGTGATCCGGTTAATCCCATTGATTCAGTACAGGACAGAAGGGAACAGAGAAGAGAAAACCTTCAGTGAGTGTGCTGTTTGCTTGAATGAGTTTCAAGAAGATGAGAGGCTCAGGATTATACCAAATTGCAGCCATGTATTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAATGCCAATTGTCCACTTTGCAGAACAAGCATTTCCTTCACAAACAGATCCCAGATTGATCAGTTTCTCAACCAGAGGCTCTCTGTCTCTCAAGATCAAACCCCACCAATTGAAAACCTCATTAGTGGGGATGAGAATTTTGTTGTGATTGAATTGGGTAATGATCATAACAGAGGCCAAAATTTGCAGAGAAGAGAAGAAAGAGAGTTACCAGCATGTCCTATTAGTCCTTTACCAAGGAAATTGGAGCATAGAAATGTGGAAAAGAAACCAAGGAAGCTCCATAAAGTTACAAGCATGGGGGATGAGTGCATTGATATTAGAGGCAAAGATGAACAATTCTCAGTCCAACCCATAAGAAGGTCATTCTCCATGGACTCATCAGGGGATAGACAATTTTATGTAGCAGTTCAAGAAGCTTTGCAGCAGCAGCAGAAGATGCAAGTCAATGAAGTCAGCTCCATTGAAGGATGCAGTGGGAGTAGTGGTAGAGCCAAGAAATCATTCTTTTCCTTTGGTTATGGAAGCAGGTCAAGAAGTTCTGTTCAACCTGTTTATTTGGACCCCTGA 1065 0.4216 MDLVTRRFLIQHGSSQSQALPPITSSGSSILHPHLHSSSTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRREDLTAMYSPGTEPRGLDDAVIRLIPLIQYRTEGNREEKTFSECAVCLNEFQEDERLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISFTNRSQIDQFLNQRLSVSQDQTPPIENLISGDENFVVIELGNDHNRGQNLQRREERELPACPISPLPRKLEHRNVEKKPRKLHKVTSMGDECIDIRGKDEQFSVQPIRRSFSMDSSGDRQFYVAVQEALQQQQKMQVNEVSSIEGCSGSSGRAKKSFFSFGYGSRSRSSVQPVYLDP* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1828 354 Pfam Ring finger domain 130 173 IPR001841 -
Lja5g1828 354 CDD RING-H2_PA-TM-RING 130 173 - -
Lja5g1828 354 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Lja5g1828 354 PANTHER RING-H2 FINGER PROTEIN ATL16 18 353 - -
Lja5g1828 354 SUPERFAMILY RING/U-box 130 179 - -
Lja5g1828 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 178 IPR013083 -
Lja5g1828 354 PANTHER RING-H2 FINGER PROTEIN ATL16 18 353 IPR044600 GO:0016567|GO:0016740
Lja5g1828 354 SMART ring_2 131 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1828 Lja-Chr5 21488968 21490596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1828 31 354 C3H Transcription Factor Family AT1G04360 49.721 1.93e-98 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1828 - - gmx:100775286 506.138